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Natural Prodcast Episode 12: Nadine Ziemert
… about natural products and the science and scientists of secondary metabolism. Welcome back. This will be episode 12 of … all these very, very related genomes, right – on their 16S level, they’re almost identical! But seeing all these … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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Sequencing Submission Requirements for DNA Synthesis
… include the following items: … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … How To … File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. …
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis and pathway engineering Mass spectrometry … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript sequence …
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FICUS
The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … to DOE mission is appropriate. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… it. I’m keeping to my schedule. This should be coming out on the first Thursday of the month, just like I promised. … of her work, including bacterial quorum sensing and its effects on regulation of natural product biosynthetic … them back to us and we'll do a PCR analysis to sequence the 16S and things like that to figure out what they actually …
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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in … A Letter of Intent is required. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in genomics and other … Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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A renaissance for the pioneering 16S rRNA gene
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Natural Prodcast Episode 4: Nancy Keller
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Welcome back to Natural Prodcast! … from the University of Wisconsin. Like we discussed in the primer podcasts ( part 1 here , part 2 here , and part 3 … do you check if they’re there? Like we always talk about 16S for bacteria, but we don’t talk about it so easily with …
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Frequently Asked Questions: Project Management
Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA Synthesis projects: Miranda Harmon-Smith … QC results, SRA accessions, library names, and protocol and platform details. The Sample QC report lists all the samples … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …
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Natural Prodcast Episode 19: Bill Fenical
… … DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the … we want to talk a little bit about. It’s sort of early stages. But I think that is emblematic of some of the … course using modern phylogenetic tools measuring genes, the 16S gene, and comparing it with everything that’s known. So …
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Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary
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