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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is usually an individual in a central office, such as President, Rector, CEO, Sponsored Projects Officer/Director …
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Data Policy
Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … place during the transition to the above JGI Data Policy. Pre-FY22 proposals: Proposals accepted before FY22 are …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help or harm plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … The team then compared this dataset against nearly 80 previously published fungal genomes on the JGI data portal …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science … … Metabolic processes and trophic interactions in Antarctic cryptoendolithic communities … CSP Large-Scale LOI #1 … CSP …
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FICUS
Integrating Collaborations for User Science (FICUS) call represents a unique opportunity for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …
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CSP New Investigator Call
… initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive … projects will provide pilot data to assess feasibility of a novel approach or form the foundation for a large-scale CSP …
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FICUS Overview
… to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National … innovative research exploiting a diversity of capabilities. Previously, researchers had to apply to each facility with … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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NeLLi — Symposium on New Lineages of Life
… 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the … that facilitate the shift from uncovering microbial novelties to deciphering metabolic and functional … to access novel microbial lineages, leading to a new appreciation for the extent of diversity. The phylogenetic and …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … for Industrial Microbiology and Biotechnology’s (SIMB) new President-elect. I also want to take a minute to mention … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … about several different pieces of her work, including bacterial quorum sensing and its effects on regulation of … biosynthetic gene clusters. Specifically, these are Tet repressors that oftentimes turn off these biosynthetic gene …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … and today we have Francisco Barona-Goméz, or Paco, as he prefers to be known among friends in natural products. He’s … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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Secondary Metabolites Program
Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … environments and with each other, from defending against predators to aiding in symbiotic relationships and nutrient … portion of the biosynthetic gene clusters (BGCs) being expressed. The program works to uncover these hidden …
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