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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project types supported, …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … Appendix identifies the type of work or specific proposal to be covered under the Agreement. The signing official must … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural … say that. I mean, we just proposed something, and if people find it useful then we have a set of rules that we can stick … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant bioenergy and … Reviewers consider technical feasibility and readiness to begin work, checking such factors as genome size, …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … things that we don’t recognize, because the only way to find things is by comparison. We’ll talk about that when we … This the second episode of Natural Prodcast, which continues a conversation from the …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural … problem in the field, that there were many papers reporting sequences and pathways– sequence is not right to say. But of … Marnix and his collaborators have a fantastic set of software tools for exploring secondary metabolite …
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Natural Prodcast Episode 22: Alison Narayan
… Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … And so there are different ways that we decided which sequences made it onto that list. So the majority of them … could have arisen from. DAN UDWARY: OK, so sort of a phylogenetic reconstruction kind of a thing. ALISON NARAYAN: …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI. … follow the steps outlined below. Click the drop-downs to learn more about each step in the process. If you have … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, which is not ideal for me keeping myself on … so far is that you can have very, very disparate amino acid sequences for synthases that produce the same signal. So …
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Metabolomics
…  Through this identification, metabolomics enables functional genome annotation, improves understanding of the role small molecules play in diverse biological … systems, sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI …
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … DNA sequencing and actually get to the DNA sequence – sequences for the genes that code for the proteins that … This the third episode of Natural Prodcast, and the third and final part of our …
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Industry Engagement Program
… than 2,500 users that predominately come from the public sector: academic and government institutions — with … joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the … and assembled physical DNA constructs that can then be functionally characterized.  Our metabolomics platform …
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