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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint … DNA sequence – sequences for the genes that code for the proteins that produce secondary metabolites. Do you recognize this? DNA 🡺 RNA 🡺 Protein ALISON: This is central dogma. DNA to RNA to … Episode Transcript …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… DAN: All right. Welcome back to Natural Prodcast. I did it. … bind similar ligands. And so one of-- DAN: OK. The similar proteins are going to bind similar molecules. Yeah, OK. … so that thioesterase at the end of this large multimodular protein allows for release from the DNA, either as a …
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Team Science Reveals Important Protein in Poplar
… Knockout experiments showcase potential for engineering bioenergy crops The Science … National Laboratory (BNL) led a team that  identified a protein , PtrbHLH011, within poplar involved in plant … for Functional Nanomaterials (CFN), National Synchrotron Light Source (NSLS-II), the Molecular Foundry and the Joint …
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Structural and Functional Modularity of the Orange Carotenoid Protein: Distinct Roles for the N- and C-Terminal Domains in Cyanobacterial Photoprotection
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Natural Prodcast Episode 16: Marcy Balunas
… DAN: Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … easy to search for because there are patterns of domains, protein domains that you look for. And if you find those all …
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The Essential Role of the N-Terminal Domain of the Orange Carotenoid Protein in Cyanobacterial Photoprotection: Importance of a Positive Charge for Phycobilisome Binding
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of … or you could look at metabolism markers like phosphoprotein S6. So if there is a perturbagen present– DAN … encyclopedia of enzymes at Aldridge that I could use to buy green uricase or “Wittig-ase” or whatever I was looking for. …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy … with sequence similarity, either we just looked at which protein domains are in a gene cluster or we did sequence … are a few other efforts maybe that are out there and doing slightly different approaches, but antiSMASH has become the I …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and … The Microbial Program focuses on using advanced sequencing technologies to … and single cells. This effort uncovers novel genes, protein families, and pathways, enhancing our understanding …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint … right? That’s the flavor of monoterpenoids. The very light natural product that gives you this fresh scent of the … So, we were essentially using brute force to isolate the proteins. The proteins are the biological version of the …
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DNA Synthesis Program
… The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the … The DNA Synthesis Program plays a central role in advancing functional genomics, … Genome to Enzymes and Pathways focuses on discovering and characterizing enzymes …
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Machine learning sheds light on microbial dark proteins
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