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FICUS
The Facilities Integrating Collaborations for User Science (FICUS) call … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS … Accessing Resources at Multiple DOE User Facilities with a Single Proposal describes the resources available from the …
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Plant Program
… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … relationships as well as insights into clade-specific novelties and expansions.  … Brachypodium distachyon is an … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Fungal & Algal Program
… to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the … strains. This approach allows for the identification of key functional traits that have direct applications in bioenergy … into bioenergy and bioproducts. The program’s fungal genomics research explores new metabolic processes and …
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than … annotation based on chemical standards or computational approaches. Relative abundance of identified metabolites and …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, … and analysis of (meta)genomic, (meta)transcriptomic, and functional genomic data and serving them to users via the … ANI is used to ascertain the species specificity of single cells and genomes extracted from metagenomes, and …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … about the metabolomic data that, very nicely, with new approaches like that one push forward by Pieter Dorrestein – … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … or secondary metabolism, has been … not dominated by, but driven by drug discovery. We know that many natural product … often use primary metabolites as building blocks to produce novel molecules. And so we’ve got glycosides being made into …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s … time called Genbiotics , which was a large program to find novel antibiotics. And this particular project focused … we noticed that BiG-SCAPE was very scalable compared to approaches before that. But when you wanted to include more …
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CSP Large Scale Call
… is focused on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based approaches to unravel functional capabilities of plants, microbes and microbial …
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Frequently Asked Questions: Project Management
Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA … ) The following tools are available for functional annotation/curation of your genomes Microbial … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …
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Community Science Program
… community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of … call is for PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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Natural Prodcast Episode 16: Marcy Balunas
Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it going?  DAN: Good. How are you?  MARCY: Am fine. I live in a … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … We find chemistry that’s known, or sometimes novel, but often known, and yet the clusters don’t look the …
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