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Microbiome Data Science Team
… analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … types) (Nature Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of genomes … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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User Support
… work and outline roles and responsibilities resulting in a formal Statement of Work (SOW). All work performed at the JGI is initiated via the Work Initiation … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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University of California, Merced Internship Program
… industry-level work and coding. Receive mentorship, network and connect with Lab staff. Increase their technical …
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Biotech Partners
… industry-level work and coding. Receive mentorship, network and gain connections with lab staff. Increase their …
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DNA Synthesis Program
… bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical energy and … by synthesizing genes, pathways, and whole chromosomes for bioenergy and bioproduct applications. The program has …
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Alabama Agricultural & Mechanical University Internship Program
… 2024 was a year of first, including the flagship internship … Institute. AAMU students spent two months in Berkeley, California honing their scientific skills and collaborating with … industry-level work and coding. Receive mentorship, network and gain connections with lab staff. Increase their …
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CalTeach
CalTeach is a program for undergraduate majors interested in developing a deep … as well as a unique opportunity to complete a California K-12 science or math teaching credential as an undergraduate … industry-level work and coding. Receive mentorship, network and gain connections with lab staff. Increase their …
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Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data
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Products
… to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … to the  MassIVE repository . Not all products are available for all proposal calls.   Please review the call language … Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our … plant-fungal symbionts … Elucidation of the gene regulatory networks governing terpenoid-mediated plant environment … communities … CSP Large-Scale LOI #1 … CSP Large-Scale LOI #2 … CSP New Investigator Submission … CSP Functional …
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IMG Group
… components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, … state-of-the-art data processing and analysis pipelines for the interpretation of microbiome omics data Developing … (Alignment fraction, AF) have been computed for nearly 28,000 bacterial and archaeal genomes. By clustering genomes …
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Data Ecosystem
… its partnership with NERSC and the DOE Energy Sciences Network (ESNet), the JGI has unique access to both expertise and infrastructure to facilitate these efforts. Particular areas of emphasis will be the development of tools and infrastructure for microbiome data science, and the development of new …
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