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FICUS-NERSC/KBASE
… scientific discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE … To jointly support these missions, and to expand upon highly successful past collaborations, the DOE JGI, NERSC … more customized analysis, the JGI also participates in publication of results. …
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Frequently Asked Questions: Project Management
… Eukaryotic projects: Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , … manager may then schedule and allocate resources for DNA sequencing. … Guidance on international shipments can be found in the Sequencing Sample Overview file in our HERE (TK) .  Note: …
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Natural Prodcast Episode 5: Brad Moore
… Bill Fenical. And we connected to JGI through the Community Sequencing Program, and they worked with us to sequence two … two sequenced genomes of a Streptomyces , or gram-positive high GC organism.  Dan: Yeah, not a lot of natural product … was struggling with closing this genome. And there was this high repeat sequence area that they were having some …
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Plant Microbial Interactions Group
… or low phosphorus), and how cell identity impacts this response. We will eventually construct a bioenergy plant … Single-cell characterization of plant/environmental responses … Selected Publications …
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Natural Prodcast Episode 6: Marc Chevrette
… at, historically, for these pathways, they’ve got really high GC content, which means their base usage is skewed, and … the chemistry of the molecules that get produced changes in response to different selective pressures. It’s really hard … synergistically or just tolerating each other within a niche. So those are big questions. I think that’s where my …
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Natural Prodcast Episode 18: A CSP Primer
… many microbes. We still we work in plates, right? We’re a high throughput sequencing. We have high throughput sequencing … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore … and bioeconomy applications. The program provides high-quality, large-scale genomic data to advance microbial … linking strain-level genetic variation to ecological niche adaptations.  Single cell sequencing approaches are …
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Natural Prodcast Episode 14: Nigel Mouncey
… and microbiology just followed me all the way through my high school days in England.  DAN: What did your dad do in … And that’s led by Hiroshi Otani with his postdoc, Sylvia Kunakom. And so we are exploring a whole different set … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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JGI-TMF Critical Minerals and Materials Call
… of critical minerals and materials. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … provides customized analysis, the JGI also participates in publication of results. Go here for additionial information, …
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Environmental Genomics Group
… populations (Hungate et al. 2015). With the development of high-throughput SIP (Nuccio et al. 2022) and terabase-scale … Harnessing high performance computation for metagenomics … Selected Publications …
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DNA Synthesis Program
… tools that enhance biofuel production and biosystem design. High-throughput design and synthesis capabilities accelerate … JGI as a tool for extracting specific sequence regions in a high throughput manner from any genome, and facilitate whole …
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FICUS
… research proposal.  Successful applications will focus on high-risk/high-payoff proposals within the focused topic … to DOE mission is appropriate. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … provides customized analysis, the JGI also participates in publication of results. …
Learn more

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