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Frequently Asked Questions: Project Management
… including a downloadable pdf of products categorized by Science Program.  … work on your proposal may begin.  You will be notified by your project manager in the initial correspondence with … of protocols, found in our HERE (TK) , used successfully by investigators in the past.  These protocols are not …
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Institutional User Agreements
… of sequencing data for synthesis. This agreement, required by the DOE for all work performed in its User Facilities, is … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … execute a 2024 version .  The recent updates were approved by the DOE to address the DNA Synthesis program. When fully …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… that keep microbes — and the enzymes that would be produced by microorganisms — out,” said JGI user/collaborator … loads of tough plants. Thanks to gut microbes — namely, anaerobic fungi — these animals are able to pry apart plant polymers …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the “chytrids”).  A collaborative team led by Joey Spatafora at Oregon State University, Jason Stajich … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics … Harrington LB, et al (2018) Programmed DNA destruction by miniature CRISPR-Cas14 enzymes. Science … Selected Publications …
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Metabolomics
…   Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an … experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as …
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Reductive amination cascades in cell‐free and resting whole cell formats for valorization of lignin deconstruction products
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Natural Prodcast Episode 10: A Primer on Genome Mining
… can just mediate so many kinds of interactions. And by understanding them, we can promote the health and … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … in the earlier primers. In bacteria, at least, and in most fungi, biosynthetic gene clusters, which are the genes that …
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Plant Microbial Interactions Group
… in how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered … is a dynamic and complex ecosystem that includes bacteria, fungi, viruses. Resident viruses can be found in a myriad of bacterial strains, whereby they can modulate host metabolism, gene expression and …
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DNA Synthesis Program
… program supports cutting-edge research in synthetic biology by synthesizing genes, pathways, and whole chromosomes for … cycle, helping researchers optimize genetic systems. By enabling these cutting-edge approaches, the program … research to address energy and environmental challenges, aligning with the DOE's vision for a sustainable, bio-based …
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Visual Comparative Omics of Fungi for Plant Biomass Deconstruction
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by Clarivate Analytics. This year’s list features 6,849 … the discovery of anaerobic fungi’s ability to break down lignin , the hardiest of plant components and a key barrier …
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