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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust … large-scale liquid handling automation, and sequence analysis. … profiling transcription factor binding sites across entire genomes. This technology has been further scaled to a …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located … collaboration with partner organizations such as the DOE Systems Biology Knowledgebase and the National Microbiome Data Collective.    … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a high-throughput AI-centric …
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User Support Analysis Group
… The User Support Analysis group provides computational analysis for new technology development and JGI user science … for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work …
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JGI-TMF Critical Minerals and Materials Call
… to request the capabilities and expertise of both the Joint Genome Institute and the Molecular Foundry in one research … is no cost to the user and no granting of funds. All JGI data is made publicly available in accordance with the JGI’s … provides customized analysis, the JGI also participates in publication of results. Go here for a video and Q&A with …
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Natural Prodcast Episode 18: A CSP Primer
… do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … for microbial genome that means an annotated genome that’s integrated into our integrated microbial genomes system, … is over, the data gets released on our portals, such as IMGM. But we also then push the data to GenBank. So the raw …
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Partnerships: Myco-Ed
… train students and professors in laboratory techniques and data analyses compile original data for improving fungal … genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect … Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … for those who are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there was a subsection of … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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FICUS
… across at least two of the facilities, and generate datasets beyond what each of these facilities could generate … accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the … provides customized analysis, the JGI also participates in publication of results. …
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Natural Prodcast Episode 14: Nigel Mouncey
… off today with my interview with the Director of the Joint Genome Institute and head of the Secondary Metabolites … in an obvious way. NIGEL MOUNCEY: We did a little bit of metagenome screening work and did find related clusters. But … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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IMG/M: integrated genome and metagenome comparative data analysis system
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a … of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) … and readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and …
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User Support
… Manager will facilitate project execution by: Verifying metadata and coordinating with IMG , GOLD and others for data … has completed, your Project Manager will initiate analysis with the appropriate JGI analysis team. During this … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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