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DAN UDWARY: You’re listening to the Department of Energy … As always, you’ll find transcripts and show notes with links to lots of other resources, especially for these … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …

To expand access to integrated data, improve tools and … as well as ensure cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the …

The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and …

… experience at the JGI, the Genomics Internship Program soon expanded to include undergraduate students. To date, more than … work and coding. Receive mentorship, network and connect with Lab staff. Increase their technical skills and …

… of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for … to tap into the largely unexplored biochemical diversity within secondary metabolites, expanding their potential … to identify RNA polymerase-sigma factor targets, and have expanded the sigma factor-target pairs twofold. We are also …

… on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based approaches to unravel functional capabilities …

… … DAN UDWARY: Hey everyone and welcome back to a new session of … First and foremost, our interview this week is with Professor Brian Bachmann from Vanderbilt University’s … –what you need is what JGI is providing, which is a giant warehouse full of microbial sequences. So let’s say …

… eye, microscopy reveals unexpected complexity At first glance, the slightly murky waters in the tube look like a scoop of stormwater, complete with leaves, debris, and even lighter threads in the mix. … described the morphological and genomic features of this giant filamentous bacterium, along with its life cycle. For …

Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature … program to collect samples from across the country to standardize the process. They noted this may be the first … of water help regulate. However, the microbes also interact with compounds like fertilizers and microplastics that might …

… at the JGI by identifying the actual molecules present in an environment that influence system behavior.  Through this … functional genome annotation, improves understanding of the role small molecules play in diverse biological … mass spectrometry (LC-MS) based methods in combination with advanced computational analysis.   Overview of …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … pathways. And today, we get to present our conversation with Marnix Medema , from Wageningen University in the …