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I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … it’s not that easy. There are still not that many plant genomes, certainly nowhere close to bacterial kinds of … a question about the complexity of the problem so and the scale. So thinking about 33,000 plants, how many plants …

… … DAN: You’re listening to the US Department of Energy Joint … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …

And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that … has been fun because then we’ve been able to blow out the scale a little bit for the project. DAN: Do you see broader … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …

For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of … and no granting of funds.   Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics Status …

The User Support Analysis group provides computational analysis for new … for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work … pipelines for standard sequencing products performed at scale. Our group also performs ‘proof-of principle’ research …

To expand access to integrated data, improve tools and … analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to enable users to seamlessly access and analyze data on scales ranging from single genes and individual genomes to …

The JGI’s Metabolomics Program works to uncover the roles of small … them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … biological and environmental samples — including microbes, fungi, plants and soils. Through a combination of …

And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we … is what those would be. The work that we do at larger scale in order to look at the chemistry a little bit more …

The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …

The CSP Functional Genomics call is to enable users to perform state-of-the-art … ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable …