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…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence … and collaboration with partner organizations such as the DOE Systems Biology Knowledgebase and the National …

DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. … The … KBase integrates a variety of data and analysis tools, from DOE and public resources, into an easy-to-use platform that … bioinformatics apps and compute resources to power their workflows. The reproducible and customizable workflows are …

The JGI’s Metabolomics Program works to uncover the roles of … in living systems, particularly as they relate to DOE missions in the bioeconomy, sustainability, and … plants and soils. Through a combination of experimental workflows and computational analysis, JGI scientists are …

… natural products chemistry, and he has a project with the JGI to synthesize the genes for and explore the chemistry of … Alison is no longer with us… She’s alive! She just doesn’t work for JGI anymore! [LAUGHTER] AARON PURI: Yeah. … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… was established in part to help better-connect industry to JGI resources, as well as target academic, governmental and … institutions who haven't yet partnered with the JGI. The Business Development Team works closely with the … Office (IPO) and read the Guide to Partnering with DOE’s National Laboratories . … Recent Partnerships … The …

Group : a team that develops data science tools for workflow management and novel automations for DNA design, … assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables users to validate … develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program.    Representative software …

… was fascinating, I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … outside my yard or so. Also, what we wanted to look at is, does it make a difference if I go today and tomorrow? Can I …

… information with individual cells. Research Team    … The JGI uniquely offers the first quantitative Stable Isotope … such as, “who is eating what?” and “who is active? … The JGI provides users access to cutting-edge cell sorting, DNA … additional functional insights into microbial genomes, the JGI now uses laser microdissection to selectively isolate …

… to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … genome mining is, if I want to explain that to someone who doesn’t know much about genetics or anything else, science … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …

Fungal & Algal Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal … an international research team in collaboration with the JGI. Conserved Fungal Genes of Unknown Function offer a … algal genomes and genome annotations generated by the JGI and by others. The web portal allows users to navigate …

… go to the proposal submission page , login using your JGI account (create one here if you don’t already have an … countries (Iran, North Korea, Cuba, and Syria), need DOE permission and authorization from other U.S. government … proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New …

I didn’t know how to get towards that.  Organic chemistry doesn’t really help with getting to something other than the … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … do when you’re exploring your systems. Because I think the JGI has a little bit of a different approach. We don’t …