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Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … take to improve on the data side of things and sequencing analysis side of things to really start to be able to … I think GTDB also started that. But I think taxonomy and genomic data are still kind of a mess. DAN UDWARY: Yeah, …

… so much history from this conversation about why the ocean was basically unexplored until the 70s, and how diving was … in the process. We now have cell pellets. And we’re pulling genomic DNA out of those cell pellets. So, we’re about ready to send those for genomic analysis. And of course, we don’t know anything about the …

… carries out a number of activities to facilitate world-class science. DOE JGI Project Managers collaborate with users … has completed, your Project Manager will initiate analysis with the appropriate JGI analysis team. During this … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …

… roles in the environment, can unlock new avenues for bio-based products and bioenergy crop enhancement. The program … The Secondary Metabolites Program offers users extensive genomics, DNA synthesis and metabolomics capabilities to … biosynthetic gene clusters (BGCs), advancing pathway analysis, optimization of cell- and cell free-based …

The Community Science Program Large Scale Call is focused on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based approaches to unravel functional capabilities of … accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s …

PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate genomic … accepted proposals, sequencing, synthesis, metabolomics and analysis will be performed by the JGI at no cost to the … more customized analysis, the JGI also participates in publication of results. See more details on our Review …

… about what are they doing. And so it’s really functional genomics. And there’s a lot of sequencing based approaches, … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five … has led a vision for the JGI that sees secondary metabolism analysis and research as a driver for novel technologies …

The Sequencing Technologies Group applies cutting edge molecular capabilities and … DOE users. Adopting the latest  sequencing technologies has allowed the JGI to increase sequencing output while … with the Project Management Office to help ensure the JGI’s genomic capabilities are ready and applicable to users.  … …

The JGI has diverse capabilities in: DNA and RNA sequencing, Sample … cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products … based on feasibility and scientific merit.  Arizona Genomics Institute will produce HMW DNA needed for these …

… we’re going to talk to Kate Duncan. And Kate is– I should ask, you are Kate Duncan? Or do you want to be Katherine … that’s just incredible to think about. And then, from an genomic point of view, I mean, I don’t need to say to you, … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …

… as many as it did and how that became sort of a trend in genomics. So anyway, yeah, JGI has been working in secondary … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … a BGC fragment can be useful in some way if you’re doing comparative analysis. We want to make sure we had everything …

… the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic … Dariia et al. (2023)  A standardized quantitative analysis strategy for stable isotope probing metagenomics … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …