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… or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … lot in the past. This sort of idea of, “there’s a lot of data out there: let’s put it together”. So you have – at … that we’ve put together to try and create an open source database of all known microbial natural products. So if you …

… the idea of taking all the different natural products data that there is and putting things, coalescing them, so … basic questions that we can only really address with bigger data sets and integrated data sets. So yeah, in terms of, I … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … now, just because of the ways that we can generate data. So, obviously, it’s very apparent to us here at the … genome mining over the years, and we talk about a new publication out of JGI in Nature Biotechnology , for which …

… him about more recent work like ActDES, which is a curated database of actinobacteria for evolutionary studies, and … often end up realizing that what is defined by the KEGG [database], for example, is not enough even there. So it’s … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

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… train students and professors in laboratory techniques and data analyses compile original data for improving fungal genomic resources empower students … fungi, sterilize tissue, isolate genes and more. The metadata then goes into iNaturalist. Myco-Ed has:  ~50 lineages …

… of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological function.   To … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …

… technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is currently only accessible via Phytozome, the … resource — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief …

… . You can find additional webinars covering how to use our data portals here.  … … Shining a Light: Advanced Photon …

The program provides high-quality, large-scale genomic data to advance microbial research that drives sustainable … The program aims to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by … microbial lifestyles using AI-driven analysis of such datasets. The program also collaborates with isolate …

Systems Biology Knowledgebase and the National Microbiome Data Collective.        … Learn more about our work at the …

… high value to establish models and hypotheses, experimental data is critical to further test such hypotheses. In … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …