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CalTeach
… CalTeach is a program for undergraduate majors interested in … focuses on STEM pedagogy, educational theory and promoting diversity, equity, and inclusion, with concurrent … undergraduate degree. Our interns say their experiences allowed them to:  Learn new skills. Experience industry-level …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … pathway engineering Mass spectrometry based metabolomics Below is a table of standard product offerings, including a … ), mapping 273/273 Metagenome Cell Enrichments Obtained by physical separation of a biologically relevant unit from …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of … The “Great Plate-Count Anomaly” first described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … Phylogenetic diversity estimates show that the gap between cultivated and uncultivated …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data … metadata and its curation in our core processes. This allows us to provide diverse scientific communities with large …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy … home. Or actually not my room, it’s the room of my little baby daughter, who inherited this room from her sister. And it … those two years? So that’s the new model that we’re now following. And I think proposed it at a moment, and I think …
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FICUS Overview
… The Facilities Integrating Collaborations for User Science … aims to encourage innovative research exploiting a diversity of capabilities. Previously, researchers had to … and analysis will be provided for free to the PI by the Department of Energy’s funding of the JGI. There is …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint … people all over the word who have a common interest, united by natural products, DAN: You guys have put together a … you are interested in drug discovery, you would like to follow the winners. So natural products is clearly a winner. …
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea vents hold … metabolism, as well as those that play a role in carbon cycling. However, the high degree of variability in what … vent communities, with possible applications in biogeochemical engineering,  biofuel production and more. …
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Data Policy
… Data produced and released by the US Department of Energy … (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and biogeochemical cycles…. Viruses play a pretty important role in the cycling of nutrients in these systems.” -Mike Wilkins, …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of … or RNA mass prior to shipment to the  JGI. The documents below (posted with permission) demonstrate the importance of …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic … GOLD is a web resource for comprehensive access to information …
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