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FICUS
… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … Successful applications will focus on high-risk/high-payoff proposals within the focused topic areas that can be … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …
Learn more
Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Natural Prodcast Episode 18: A CSP Primer
… while, but Natural Prodcast is back again for another round of episodes. If you stick around for the next few months, … in terms of the annotate, the assembly, the curation, QC, annotation of these data sets. For our eukaryotes, in … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … very first compound was introduced in the early 90s and by using a polymer as a delivery mechanism. So, the polymer … bacterial speciesism is pretty sketchy anyway. BEN:  So in short I think that this is a really remarkable collection. …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … For sure. I mean, that goes all the way back to NCBI, gene annotations and ontologies and things that — things have … primer episode, we talked about genome mining through some metagenome associated genomes. And yes, antiSMASH is …
Learn more
FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific … completion of a project, the JGI makes the assemblies, gene annotations, and analyses available to the community at … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …
Learn more
Fungal & Algal Program
The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … program seeks to expand our understanding of algal biology using genomics and multi-omics by working with research labs … its major branches for users to characterize and propagate annotations across fungi. Myco-Ed Genomics Initiative   …
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Natural Prodcast Episode 17: Cassandra Quave
Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … of platforms like GNPS, it’s very poor in terms of annotations on plant natural products. Rich, rich in …
Learn more
New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … nucleus of amoebae. The ISME Journal. 8 (8), 1634-1644 … Publications … For further details, please reach out to the …
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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … al. (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Deconvolute individual genomes from metagenome sequences through short read clustering
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FICUS Overview
… to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National User Facilities into … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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