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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … evolution of polyploidy.” Evaluating Polyploid Genomes in a Pan-genomic Context For the study, partly enabled by the …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. … and the structure and extent of the Antarctic microbial pan-genome. Since these microbes thrive under extreme … This work was supported by the Australian Research Council … (project 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  … , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. … The work (proposal: award at  https://doi.org/10.46936/10.25585/60001405 ) …
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Forest Fungi, Seagrass, and a New View of Symbiosis
… Three stories of JGI-supported research, connected to nutrient cycles. Francis Martin and Lucas Auer discuss their work on …
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Editorial: Crop domestication and selection: an evolutionary view affecting the development of agronomic traits
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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th … Notable Stories …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by … and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … The research efforts of the group have concentrated in demonstrating the power of … Pavlopoulos GA et al. (2023) Unraveling the functional dark …
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JGI Advisory Committees Code of Conduct
… Guiding Principles All staff members of the US Department of Energy (DOE) Joint Genome Institute … with respect and consideration, valuing a diversity of views and opinions; Exercise tolerance for diverse ideas and …
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User Support
… Notice Effective July 27, 2026, the JGI will move to a new login service, requiring the use of an ORCID account with two-factor authentication enabled … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Natural Prodcast Episode 15: Katherine Duncan
… Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today … about molecular networking, because I really enjoyed the review that you wrote with Marnix on putting that stuff … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted … ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If … The JGI is inviting researchers using the U.S. Culture Collection Network (USCCN) to nominate their strains …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion … out there as soon as possible. Not one of our normal interviews, but instead it’s two interviews in one. My new … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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