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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of … DNA sequence – sequences for the genes that code for the proteins that produce secondary metabolites. Do you … Episode Transcript …
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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical review by JGI staff as well …
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Natural Prodcast Episode 22: Alison Narayan
… DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. This continues the series of interviews we recorded at … do engineering to improve the physical properties of a protein and make it easier to work with. But sometimes, what … Episode Transcript … In this episode, Dan and Jackie talk to Alison Narayan , from the University …
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Natural Prodcast Episode 12: Nadine Ziemert
… DAN UDWARY: You’re listening to the Department of Energy … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all that stuff. And … Episode Transcript … This is our interview with Nadine Ziemert, from the University of Tübingen. This …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley … science and collaboration with partner organizations such as the DOE Systems Biology Knowledgebase and the National … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a …
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Team Science Reveals Important Protein in Poplar
… Knockout experiments showcase potential for engineering bioenergy crops The Science … National Laboratory (BNL) led a team that  identified a protein , PtrbHLH011, within poplar involved in plant … This work was supported by the U.S. Department of Energy, Office of …
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Machine learning sheds light on microbial dark proteins
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Carotenoid–protein interaction alters the S1 energy of hydroxyechinenone in the Orange Carotenoid Protein
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy … way to get to know the whole community. So I was interacting with almost everybody in the field, and that was so … with sequence similarity, either we just looked at which protein domains are in a gene cluster or we did sequence …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of … of Energy under contract no. DE-AC02-05CH11231. The work was supported in part by grants from the Paul Allen Frontiers …
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Metabolomics
…   Metabolomics strengthens -omics technologies at the JGI by … small molecules play in diverse biological systems, sheds light on nutrient cycling, and leads to the discovery of new … environmental samples using advanced liquid chromatography mass spectrometry (LC-MS) based methods in combination with …
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Institutional User Agreements
… Every approved proposal starts with a User Agreement — before any … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is usually an individual in a central office, such as President, Rector, CEO, Sponsored Projects …
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