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… DAN UDWARY: You’re listening to the Department of Energy … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … and then trying to see if the trees make sense, biologically. So if I can see patterns in that certain clades have …

… Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve … discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE Systems … past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in biological data science as part of the …

… Dan Udwary: You’re listening to the Department of Energy … genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … a bad location for a little baby. Rooming in, is what they call it, right? Alison Takemura: Yeah. Crashing. Maybe it’s …

… DAN UDWARY: It’s been a while, but Natural Prodcast is back … hear about are some more of the details around that. Specifically, we’re going to talk about JGI’s Community Science … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …

… The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of … of single-cell genomes and directly link functional information with individual cells. Research Team    … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics …

… The JGI Project Management Office carries out a number of activities to … work and outline roles and responsibilities resulting in a formal Statement of Work (SOW). All work performed at the … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …

… The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 … to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National … provides customized analysis, the JGI also participates in publication of results. …

… Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … Exploring the fascinating world of giant viruses, which challenge our … insights into viral evolution and complexity, and encode for a treasure trove full of novel genes ready to be tapped …

… DAN: Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it … is a great question because my path has been what I would call circuitous. I didn’t follow the traditional sort of … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much …

… One of the JGI’s key assets is our user community, comprising a broad range of … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data … Each portal lists a contact, or you can reach out via the form on our website.   …

… DAN UDWARY: You’re listening to the Department of Energy … Hey, Dan. DAN UDWARY: So I guess this is now– we’ll call this the second season of Natural Prodcast. We’ve both … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …