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Genome Insider
… researchers — JGI Users — and dives into their work on all kinds of organisms, from plants and fungi to microbes and viruses. Listen in to …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse … biogeochemical cycling and inter-organismal interactions. These insights are crucial for addressing key … The Microbial Program focuses on using advanced sequencing technologies to explore …
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A layered defense against plant pathogens
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have … (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is to generate …
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User Advisory Committees
… Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core values, which guide the relationships we nurture in our workplace and seek to establish … our stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in this Code of …
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A Plant Root Atlas for Tracking Developmental Trajectories
… zu Berlin   has developed an atlas that maps gene expression patterns in the  Arabidopsis root, profiling nearly … the largest integration of single-cell datasets in plants and provides a foundation for still larger efforts in diverse plant species beyond models,” he said. Cole annotated cell …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Viral Genomics Group
… Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral … While an ever-increasing number of phage and virus genomes have been assembled and reported from metagenomes, …
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CAZome comparison in relation to host plant for selected Sordariomycete and Dothidiomycete plant pathogenic fungi
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JGI@25: Strengthening Soybean
… explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has desirable properties as … Leaves grow discolored and rust pustules develop as the pathogen feeds on its soybean host, which is maintained … Sainsbury Institute, by annotating not just one but three genomes for P. pachyrhizi , which are available on MycoCosm …
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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic information into biological function.  The emphasis is on projects … be externally peer-reviewed for scientific merit, DOE mission relevance , proposed data usage by the …
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Jeremy Schmutz
… working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he constructed … eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community …
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