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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science calls. These …
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Understanding Wildfire Recovery, Starting in Soil
… A metagenomic look at the soil microbes present a year after a wildfire. The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of … genes with functions useful for forest recovery, this study sheds light on how microbes contribute as a forest …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Joint Genome Institute, builds upon thousands of microbial …
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Prokaryote Program User Advisory Committee
… management and strategic objectives of the microbial and metagenome programs and report back to them. The Committee …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… right. Welcome back to Natural Prodcast. I did it. I’m keeping to my schedule. This should be coming out on the first … biosynthetic gene clusters. Specifically, these are Tet repressors that oftentimes turn off these biosynthetic gene … or online catalog, I guess. So we've also been able to get soils from Purdue campus itself and been able to actually …
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 1
… viruses impact the release of greenhouse gases from Arctic permafrost. But to see what they’re doing, he first needs their DNA.   …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership role in providing genome science capabilities to support BER's … the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA …
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Plant Microbial Interactions Group
… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial … partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and spatial … Plant microbiomes hold the amazing ability to influence plant development, fitness and …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within the Integrated … Neighbor (KNN) Classification. LDA is a supervised data compression technique that was used to take the complex, … The work conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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Natural Prodcast Episode 15: Katherine Duncan
… Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today we’re going to talk to Kate Duncan. And Kate is– I should ask, you … I wouldn’t say I was one of these people that wants to study oceanography and was fascinated by the oceans, though … microorganisms. And there’s a group of PIs across the UK that were involved in the initial discussions. But we all …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a … effort, researchers have identified a protein in soil viruses that may promote soil health. The work was … The Impact The specific protein described in  a recent study in  Nature Communications , a chitosanase, is tied to …
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Project Management Office
… to onboard users and guide them through the process of working with our facility. This includes help with: preparing a Statement of Work, completing a formal User Agreement, … Please review our FAQ in advance of contacting the PMO office.  … Before work can start on any approved proposal – including the submission of samples for sequencing, or the …
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