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Environmental Genomics Group
… of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … strategy for stable isotope probing metagenomics . mSystems , e01280-22. 10.1128/msystems.01280-22 Clum, A. et … 10.1016/j.tim.2019.03.003 Eloe-Fadrosh, Emiley A. et al. (2016)  Metagenomics uncovers gaps in amplicon-based …
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Natural Prodcast
… about natural products and the science and scientists of secondary metabolism. Natural products, secondary metabolites, and specialized metabolites all refer to the …
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Natural Prodcast Episode 7: Ben Shen
… now there are six ADCs that have been FDA approved over the past two decades, and, remarkably, of the six, two of them … genomic revolution, to me, as a natural part chemist for microbial natural product, is that I love microbial natural … So, you may know the so-called Nagoya protocol, which prevents taking bio-resources from the native countries. So …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… in order to challenge or kill off competition, right? And plants do the same sorts of things. And then, bacteria often … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial … RiPPs. That sort of holds up with what we have seen in the past with people that have done metagenomic studies on, say, …
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Natural Prodcast Episode 5: Brad Moore
Prodcast,” a podcast about the science and scientists of secondary metabolism.  Brad Moore, UC San Diego and Scripps … chemicals that are coming out of organisms, whether it be a plant or from the bottom of the ocean, from a sponge, or a … wanted to be true to my roots, and always work with marine systems because that’s just where my innate curiosity and …
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Plant Program User Advisory Committee
The Plant Program Advisory Committee is chartered to offer … on the effective management and strategic objectives of the plant program. The committee serves as the program's key …
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How To Use Our Systems
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Natural Prodcast Episode 15: Katherine Duncan
And as a result, there’s been a lot of work on open pond systems and infrastructure and growing microalgae. And to … And sometimes, in terms of biological activities– like antimicrobial or something– sometimes a little difference is … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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Natural Prodcast Episode 16: Marcy Balunas
… to do an independent study on ethnobotany of some of the plants that people were using for medicines in this very … tell us about this squid-microbe relationship. Or is it a microbial community with microbial community relationship?  … so my collaborator and I have this idea that they work like pastry bags almost and so they are essentially squeezed out …
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Mission
… in studies of complex biological and environmental systems. We optimize our service to the community through … went on to advance basic science by sequencing scores of microbial species as well as several model organisms and … of our Community Science Program, characterize organisms (plants and microbes) relevant to the DOE science mission …
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Natural Prodcast Episode 6: Marc Chevrette
As a host, and a little bit of my newer work is focused on plants, but in both cases, you know, these molecules are how … Tiny Earth is using to be different than screening in the past, is in the types of pathogens or challenges where we’re … Canada. I just got back from a conference in Canada on antimicrobial resistance sponsored by the Garner foundation. And …
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Products
… analysis Relative abundance profiling of non-polar (e.g. secondary metabolites, lipids, etc) metabolites using … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial … contigs. Assembly, annotation ( IMG ) Depends on project Plant and Algal Standard Draft Whole genome shotgun …
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