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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) … 190.304 109% 2,164 2,136 98.7% Q2 2025 175 152.100 87% 2,117 2,112 99.8% Q3 2025 175     2,140     Q4 2025 175     … 87.500 167.731 191% 2,140 2,184 102.1% Q4 2022 87.500 180.078 206% 2,164 2,208 102.0% *Includes Illumina and PacBio …
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Natural Prodcast Episode 14: Nigel Mouncey
… never forced it on me, but we always had these scientific news magazines lying around at home. And I would just pick … was bioengineering bio-process R&D, BBRD, a group of about 75 people. So our biggest project was the spinosyn family of … looking at emails and I just saw this pop up. And saw a C&E News job little box and I thought, wow, this would be …
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Streamlining Regulon Identification in Bacteria
… sequencing, they were able to identify the target genes of 11 sigma factors in Streptomyces coelicolor . The Impact As … and were able to identify the associated target genes in 11 of those. That work published in Nature Communications on … of whole transcriptomes, and the third is determining the 5’-ends by 5’-end sequencing, from which those promoter …
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Finding the Fermenters
… interactive browser – contains the phenotypic records of 8,350 organisms along with 4,355 genomes and 13.6 million genes. The results reveal that … genome on KBase … Narrative for Porphyromonadaceae sp. W3.11 genome on KBase … The phenotype and genotype of …
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Natural Prodcast Episode 17: Cassandra Quave
… than HIV/AIDS does every year in the US and it has since 2005 even though we technically have a number of different … then my lab pleaded mercy, and I said, OK, we’ll just do 2011 to present day. And it was still like 4,000 articles we … plants and bringing them back is not your jam, the good news is there’s this amazing resource that can be provided …
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Natural Prodcast Episode 6: Marc Chevrette
… over time. And yeah, I mean, that was let’s see, maybe 5,6,7 years ago, and I’ve – I haven’t looked back. ALISON: … that’s really popped up at funding agencies and the popular news recently because a lot of soldiers in the Iraq and …
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Natural Prodcast Episode 12: Nadine Ziemert
Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And … NADINE ZIEMERT: It wasn’t that long ago, but maybe 2006, 2007, or something like that. And we actually found the whole …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… in these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on … new GEBA-Actino genome sequences were combined with nearly 5,000 publicly available ones and 1,100 metagenome-assembled …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … microbial populations in oxygen minimum zones identified SAR11 bacteria as initiators of nitrogen loss in these waters. …
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Tracing the Evolution of Shiitake Mushrooms
… atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and 13 samples from the … enzymes, oxidoreductases, and cytochrome P450s. This includes the species L. raphanica, which has been … by the NSF awards DEB- 1456588 to D.H. and DEB-1442113 to A.R., the Department of Energy award 0000238431 to …
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A Plant Root Atlas for Tracking Developmental Trajectories
… type and cell identity mutants . Dev Cell. 2022 Feb 28. S1534-5807(22)00033-8.doi: 10.1016/j.devcel.2022.01.008 Relevant … Single-Cell Data Viewer Tool on Phytozome Biosciences News:  Plant Single-Cell Solutions for Energy and the …
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Fungus Fuels Tree Growth
ORNL is managed by UT-Battelle, LLC, under contract DE-AC05-00OR22725 for the DOE. The work conducted by the DOE Joint … States Department of Energy under contract DE-AC02-05CH11231. Support was also provided by the NSF Zygolife … on the Biology of Tree and Forest Ecosystems (ARBRE) (ANR-11-LABX 0002 01 to F. Martin), JGI Community sequencing …
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