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Natural Prodcast Episode 10: A Primer on Genome Mining
… just come out where I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome … And so then you’d start cordoning off areas and digging more and then trying to locate the gold. And eventually, … involving– could you continue to elaborate more on maybe an intuitive way of grasping that? DAN UDWARY: Well, I’m …
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Phytozome: a comparative platform for green plant genomics
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The Transcription/Migration Interface in Heart Precursors of Ciona intestinalis
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Community Science Program
… community at large. In most cases where the JGI provides more customized analysis, the JGI also participates in publication of results. See more details on our Review Process below .  … What happens …
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JGI@25: Studying Sorghum’s Survival Skills
Brachypodium distachyon ( 2017 ), have identified many more genes than found in the single reference genome, … sequenced, this line is sweeter, taller, and grows more biomass. In ongoing work, JGI and collaborators are … on sorghum’s drought tolerance.     … Sorghum bicolor on Phytozome … Learn more on the EPICON project … Plant …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
As SIP experiments shed more light on microbial communities than ever before — … Probing as a service at JGI, we're trying to bring in a lot more people who want to do it but just otherwise couldn't or … and users are looking for ways of making these experiments more repeatable and reproducible. Essentially, the aim is to …
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Natural Prodcast Episode 14: Nigel Mouncey
… is totally free. It’s a great opportunity to learn more about JGI, hear some excellent talk from our users and … and interesting, so I hope you’ll check it out. You can get more info at usermeeting.jgi.doe.gov . And I’ll be sure I … with Bacillus to help them engineer organisms to produce more riboflavin. We already had a fermentation process with …
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Natural Prodcast Episode 15: Katherine Duncan
… specializations and the things that we dig into maybe a bit more than others. Kate Duncan: Yep. Dan Udwary: You know, … of that has been quite interesting. Dan Udwary: Tell me more about natural products and microalgae, because I’m not … and growing microalgae. And to make the biofuels more economic, they also would like to extract some high– …
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Metagenome Program
… genomes and mobile genetic elements, linked to custom interfaces and visualization tools for user analysis. …
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Plant-Microbial Interactions Group
… spatial transcriptomics to profile the plant/environmental interface. We are using these methods to understand how …
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Natural Prodcast Episode 22: Alison Narayan
… this description, but I’d say that Alison is not one of the more normal kinds of natural products people we usually talk … the chemical capabilities of flavin monooxygenases, and more broadly about the field of biocatalysis and what needs … OK. ALISON NARAYAN: So at the top where you have the interface between the atmosphere and the reaction, plenty of …
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Natural Prodcast Episode 9: Roger Linington
… as an expert in natural product structure elucidation, but more recently, he’s been leading an effort to build The … We’re still at SIMB. ALISON: Yay! SIMB! DAN: We have one more interview to do at SIMB. And sitting in the crazy hotel … for us to build a basic database structure and a basic web interface. And we could then show that to collaborators and …
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