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Natural Prodcast Episode 16: Marcy Balunas
… than anyone else.  DAN: Yeah. I mean fine in pandemic adjusted terms right?  MARCY: Yes–  ALISON: Yeah.  MARCY: … the traditional sort of academic path or even just the scientific path of “I know exactly what I’m going to do and I’m … It gardens the fungus in order to make parts of it for food.  And then some of our more recent work, what we’ve …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do genome mining on … this is Challis et al, Chemistry and Biology, 2000, 211-224, 7:3 And so, you can then make predictions about NRPS’s … bacterial and archaeal orders as seen on the phylogenetic tree, with new lineages of uncultivated genomes from the GEM …
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Institutional User Agreements
User Agreement and Appendix. An Appendix identifies the type of work or specific proposal to be covered … with an active JGI User Agreement older than January 2024 will be required to execute a 2024 version .  The recent updates were approved by the DOE to …
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Natural Prodcast Episode 20: Brian Bachmann
… how much blood, sweat, and tears went into trying to identify that you had the right cluster before you sent it out for sequencing. BRIAN BACHMANN: That’s right. And then just– and then in terms of there’s sequencing an organism by … what we did, we didn’t even sequence the whole genome. We just did a low-resolution shotgun pass where we sequenced …
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Filling in the Plant Tree of Life
We could unlock new innovations to drive more productive food, medicine, and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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Global Archaeal Diversity Revealed Through Massive Data Integration: Uncovering Just Tip of Iceberg
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are microscopic, … and planktos for ‘wanderer’). But they vary across the global ocean. Phytoplankton communities in warmer waters, … observation of cold and warm microbial networks, and just how clear and stark the biogeographic boundary is …
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THE Bioenergy Tree
The US Department of Energy’s favorite tree is poplar. They’re the fastest growing trees in the Northern Hemisphere, making them tantalizing …
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Natural Prodcast Episode 22: Alison Narayan
… came at it not necessarily based on the biology really just from as a simple organic chemist, can I make that big, beautiful molecule? And so I’d like to think I’ve evolved a bit … sequence reconstruction”,  PNAS.  2023,  120, e2218248120. doi : 10.1073/pnas.2218248120 …
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Natural Prodcast Episode 19: Bill Fenical
TAKEMURA: I wanted to ask, did scientists at that time just think that the ocean was kind of like a desert? Or that … marine life, there were fishes, coral, et cetera, but they just didn’t make interesting chemistry? It seems hard to … we couldn’t get a lot of chemical compound from a beautiful coral reef animal. We didn’t want to collect all of …
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Effects of Polar Light Cycle on Microbial Food Web
… understanding of carbon and other nutrient cycles on a global scale. Summary Ace Lake, located in the Vestfold … In these frigid systems, where organisms higher up in the food web like fish do not exist, nutrient cycling takes … difference offers new insight into the primary producers fueling our planet’s biogeochemical cycles. Water samples …
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Natural Prodcast Episode 9: Roger Linington
… natural products structure database, which is going to be just invaluable to the natural products community. It’s a … it in the show notes at  naturalprodcast.com . DAN: I also just want to say thanks to everyone listening. Our download … those two groups and the ways in which they approached scientific problems. And so that sort of opened my eyes to the …
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