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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … and characterizing microbial diversity, work in the Metagenome Program uses several experimental approaches to … The Metagenome Program focuses on the high-throughput sequencing of …
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Natural Prodcast Episode 22: Alison Narayan
… the series of interviews we recorded at the Society for Industrial Microbiology and Biotechnology (SIMB) Natural Products meeting earlier this … perfect timing for an October podcast release. I hope that doesn’t get me canceled.The monthly schedule seems to be …
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Bioinformatics Analysis Tools for Studying Microbiomes at the DOE Joint Genome Institute
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Natural Prodcast Episode 19: Bill Fenical
… concentration of calcium, and so on. And what difference does it make? The idea that you would say marine life make … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And … eight of these weird bacteria. And we proposed to the Joint Genome Institute. DAN UDWARY: Oh, that’s where we come …
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Partnerships: Myco-Ed
… genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect … Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ … solution for production of high-quality fungal reference genomes, this program is an important initiative that …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a … ( NERSC ) is to accelerate scientific discovery at the DOE Office of Science through high performance computing … the other participating facilities, is then forwarded to DOE for final approval.  Following DOE approval, project …
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Partners
… . The JGI has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further … support plant and other efforts. The JGI works closely with DOE computational facilities (e.g., the National Energy …
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Publication Policy
… assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI … elements are proposal Award DOI(s), JGI’s ROR ID number, DOE contract numbers Please include the appropriate Auspice …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … is convened by the JGI Director to provide guidance on the Institute’s strategic, scientific, technical, informatics, … and strategic objectives of the microbial and metagenome programs. The committee serves as the program's key …
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Natural Prodcast Episode 20: Brian Bachmann
… in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural … at naturalprodcast.com or through the JGI website at jgi.doe.gov . There’s a lot more to talk about there, and I’ll … That’s right. Yeah, I went to a SIMB meeting, Society for Industrial Microbiology meeting and– DAN UDWARY: Which is …
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JGI Portals
… to develop new algorithms, models and tools in support of DOE mission priorities. Data discoverability and … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … for comprehensive access to information regarding genome and metagenome sequencing projects, and their …
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … all over the world in the next couple of years. DAN: What does it take to become a hub? MARC: We’re still trying to …
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