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Natural Prodcast Episode 6: Marc Chevrette
As a host, and a little bit of my newer work is focused on plants, but in both cases, you know, these molecules are how … antibiotics that people were looking for in the soil kept getting found over and over again. So we call this the … this and deal with it is through these antibiotic- or antifungal-producing bacteria that live on the exoskeleton of …
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Examples: Successful LOIs & Submissions
… drafted them.  … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated temperatures … … to soil carbon storage during simulated range shifts of plant-fungal symbionts … Elucidation of the gene regulatory …
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Natural Prodcast Episode 18: A CSP Primer
And I think also the quality that we provide. So for fungal and for a lot of our eukaryotic genomes, all our eukaryotic genomes. Fungal plant, algal genomes, a lot of effort goes into generating … the case. You’re not going to have a greater chance of getting approved because you requested only 100 kb versus …
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Natural Prodcast Episode 8: Eric Schmidt
… where I was a graduate student. Aflatoxin, of course, is a fungal natural product which is a liver toxin when humans … the sponges talk to each other? ERIC:   He was looking at interactions between sponges and other organisms. So one of … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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Metagenome Program
… ecosystems.  By studying microbial communities and their interactions, the Program aims to unlock the fundamental … sequencing of microbial communities to uncover the complex interactions and functions that shape ecosystems. By … understanding of microbial community assembly and microbial interactions, including microbe-microbe and virus-microbe …
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Mission
… of our Community Science Program, characterize organisms (plants and microbes) relevant to the DOE science mission … development. Develop an understanding of microbial and fungal metabolism necessary to design communities, new … data, building predictive models for the behaviors and interactions of complex systems, and accelerating …
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Natural Prodcast Episode 11: Marnix Medema
… that. But it was really fun working together with Kai and getting this thing off the ground. Two fanatic PhD students. … called “disease suppression”, where the microbiome of a plant, so the bacteria living on and inside the roots are … projects is infectious. This episode should make a nice jumping-off point into the deeper end of genome mining after …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a … nutrients from decaying organic matter (saprobes), and many plant pathogens known to infect most major food crops and … clusters showed a >95 % accuracy in correctly predicting plant pathogens (blue) vs saprobes (green). (From Haridas S …
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Natural Prodcast Episode 13: Francisco Barona Goméz
Yeah, so any metabolite, produced by bacterial or fungal metabolism by microbes, will have a functional role. … could be a reasonable number if you are talking about a plant and a microbe interacting very stably. So it makes … then you can begin– it sounds like homology. Because I’m getting confused with the idea of– FRANCISCO BARONA-GOMEZ: …
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Natural Prodcast Episode 23: Aaron Puri
… us a little intro into just what sparked your interest in getting into natural products. DAN: Why are you here at … intersection of chemistry and biology. And it actually was jumping onto the I ntegrated Microbial Genomes and … DAN: Almost like you know that there is. AARON PURI: It’s a planted question Dan. Yeah. So overall I think what we’re …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… will be one thing I can point people to when it comes to getting out information about both SMC, and Jackie, so … not enough time and money. I mean, we have a huge marine fungal project in collaboration with Bill Fenical at … And so we also sequence a lot of fungi, and we sequence plants. And so we started thinking about if we had a …
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Natural Prodcast Episode 9: Roger Linington
… , or leave us a review on Apple Podcasts or wherever you’re getting this and tell me why you’re listening. DAN: But, … associated with data analysis, and particularly, with jumping between instruments or jumping between methods. … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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