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… [postdoc advisor] Brad Moore – who we talked to in, what, episode five – that’s one of his things was for a long time … almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we … to hear more science from her, check out her podcast Genome Insider. She talks to lots of great scientists outside of …

… enzymes to do chemical reactions. Obviously, in my work, in genome mining, we have an awful lot of crossover, where us … be working out, so expect lots more to come. Maybe a bonus episode soon, too. Thanks for listening! And enjoy this … So we’ll run things in like little Eppendorf tubes, or in 96, or 384 well plates. But then the fun really starts when …

… by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and adapting to … improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is … datasets to further gene function research. The  Open Green Genomes (OGG) project seeks to develop comparative …

… has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical energy and … the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on discovering and … in synthetic biology engineering workflows. … The IMG/M system serves as a community resource for comparative …

… them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … the program supports foundational research related to soil nutrient cycling and health, terrestrial biogeochemical … but highly recommend using the workflow in  GNPS2 .   … In support of user science, the JGI Metabolomics …

Every fall, a mysterious green growth appears on top of farmers’ fields: a microbial community that might be quietly improving the soil. Penn State researchers Mary Ann Bruns and Terry Bell …

… addressing key environmental challenges, such as improving soil health, carbon sequestration and bioeconomy … driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal … directly isolated from environmental samples.  … The IMG/M system serves as a community resource for comparative …

… “Adopt a Genome” is an informal program for faculty to “claim” the … biological insights from sequence data, employing IMG data and tools for comparative analysis, visualization … entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica …

… for uncultivated phages.  Current Opinion in Virology .  49 , 117-126 Berg, M. and Roux, S. (2021) Extreme dimensions … as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host … al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech .  37 , 29–37 Roux S, et …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … computational tools for analyzing viral fragments via IMG/VR and methods to capture  environmental viral …

Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) … transcriptome or de novo assembly), DGE, alignment files 91/126 Metabolomics Polar metabolite analysis Relative … Environmental transcript sequence Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments …

… … Adaptive strategies in a cosmopolitan and abundant soil bacterium: genetic microdiversity or core metabolic flexibility? … Microbial contributions to soil carbon storage during simulated range shifts of … communities … CSP Large-Scale LOI #1 … CSP Large-Scale LOI #2 … CSP New Investigator Submission … CSP Functional …