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Natural Prodcast Episode 18: A CSP Primer
… but Natural Prodcast is back again for another round of episodes. If you stick around for the next few months, … Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then you’ll …
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to … of biogeochemically-relevant pathways, enabling modeling of microbiomes based on functional traits. These advancements … regulation, and noncoding RNAs in microbiomes. The insights from this work have the potential to drive innovations in …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … mass spectrometry-based methods to analyze metabolites from a wide range of biological and environmental samples — …
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Microbial Program
… driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal … of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal lineages to improve … around the world. … Integrated Microbial Genomes and Microbiomes … Integrated Microbial Genomes — Plasmid …
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River microbiomes from around the world: Kelly Wrighton
… in Fort Collins have a massive undertaking: sequencing the world’s river microbiomes. And they’re using team science to do it.   …
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Plant Program
… agricultural productivity. Research spans diverse areas — from understanding how terrestrial plants and phytoplankton … naturally adapted to varied climate and soil conditions around the globe to identify genes to improve our … improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is …
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IMG Group
… data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … made it possible to confidently assign species to nearly 326 genomes. Through the analysis of cliques, it has also …
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Microbiome Data Science Team
… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … and visualization of big data. … Pavlopoulos GA et al. (2023) Unraveling the functional dark matter through global … Nayfach S, et al. (2021) A genomic catalog of Earth’s microbiomes. Nature Biotechnol . 39(4):499-509. Danko D. et …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the … public datasets.  … The Integrated Microbial Genomes & Microbiomes system ( IMG/M ) supports the annotation, … available datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The … Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … Metatranscriptomic information was also generated. The 3.8 trillion bases or Terabases of sequencing data, along …
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Mission
Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, …     Our homepage video includes external footage from:  University of Delaware Laura.Selbmann©PNRA. All the … Understand the assembly, function, and the behavior of microbiomes and manipulate them to facilitate microbial …
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DNA Synthesis Program
DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire … the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on discovering and … & Offerings … BOOST … Integrated Microbial Genomes and Microbiomes … Mycocosm … Phytozome … Inventory of Composable …
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