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Partnerships: Adopt-A-Genome
… work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of Energy Joint Genome Institute, builds upon thousands of … public datasets.  … The Integrated Microbial Genomes & Microbiomes system ( IMG/M ) supports the annotation, …
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Viral Genomics Group
… group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … and computational exploration of uncultivated viral diversity, characterization of molecular mechanisms involved …   19 , 407 Berg, M. et al. (2021) Host population diversity as a driver of viral infection cycle in wild …
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JGI@25
Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and … the JGI’s 25th anniversary, the JGI mural references dozens of iconic JGI contributions to advancing the frontiers of …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, (meta)transcriptomic, and functional … them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The …
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Natural Prodcast Episode 20: Brian Bachmann
… … DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … was less nutrients but enough that you had a lot of biodiversity. So we choose environments that are close enough … Very familiar with working actinomycetes. We can also genetically manipulate them. We can do strain improvements. …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … discussions on how to capture and characterize viral diversity, understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity.  In 2021, he was among those selected by …
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Partners
… our Plant Program, and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA … DOE Systems Biology Knowledgebase (KBase) and the National Microbiome Data Collaborative (NMDC)—to provide access to …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity hotspots Over the past few decades, advancements … in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … the estimated diversity of Bacteria and Archaea With phylogenetic diversity standing in as a representative measure of …
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Bioactive diterpenoids impact the composition of the root-associated microbiome in maize (Zea mays)
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Strain Engineering
The focus of this group, in recent years, has been to bring … to bacteria, yeasts and algae previously with little to no genetic tools enabling heterologous expression and … The developed strains represent an additional phase of user-accessible project types, in which DNA-based …
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Natural Prodcast Episode 12: Nadine Ziemert
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … of it. So it wasn’t only chemistry or only biochemistry or genetics. It was also ecology. It was also evolution. It was … see. So it doesn’t seem to be a correlation between biodiversity in taxa and biodiversity in secondary metabolites. …
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Natural Prodcast Episode 16: Marcy Balunas
… know that that’s ever necessarily like a good description of anyone because chemistry means a lot, especially when … postdoc Panama as part of the international cooperative biodiversity group (ICBG) based in Panama and was dual there … is usually going to be through synthetic biology or genetic engineering. But I think from what I’ve read you’ve …
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