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A Community Resource for Secondary Metabolite Researchers
… compounds shared by most living creatures for energy, growth and reproduction—most organisms produce a … Collaboratory (SMC) has launched as an interactive public database for the research community. With more than … ( smc.jgi.doe.gov ) is designed with two main objectives. First and foremost, it is a BGC repository that aspires to …
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Viral Genomics Group
… overview and major challenges of host prediction methods for uncultivated phages.  Current Opinion in Virology .  49 … with long standing virus-host interactions. ISME J.   15 , 1569–1584 Roux, S. et al. (2019) Cryptic inoviruses … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Natural Prodcast Episode 16: Marcy Balunas
… and the bacteria and how the chemistry is going back and forth between them is part of what fascinates me about what … based in Panama and was dual there and at Scripps where I first met Dan. I think you were almost finishing when I was … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much …
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Natural Prodcast Episode 3: The Primer, Part 3
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there. This is Dan again, … episodes. This IS the third part, so if this is the first episode you’re checking out, you probably want to go … it’s a little hard to find in print, but we live in the information age and the ebook version is available at most …
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Natural Prodcast Episode 8: Eric Schmidt
… of secondary metabolism.  DAN: Hey there and welcome back for Episode 8 of Natural Prodcast. This week, we have our … who’s a professor at the University of Utah. And Eric , I first met in the Townsend lab, where I did my PhD. Eric was … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …
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Natural Prodcast Episode 19: Bill Fenical
… … DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the opportunity to talk to one of … metabolism of some more novel marine bacteria. You know, I first met Bill as a postdoc working under Brad Moore on the … course, this is when we started thinking about, are these a resource for drug discovery that nobody knew about? And the …
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Natural Prodcast Episode 7: Ben Shen
Prodcast. It’s been about a month now since we dropped our first six episodes, and now after gathering some feedback … notes, and I’ll put up some structures and link to some resources you can use to get caught up, if you’re not … basically – so the drug discovery you can – to the general public, there’s two major – if I have to think about a …
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Programs & Platform Leads
Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA Synthesis Science Programs and draw … infrastructure of Genomic Technologies and Data Science & Informatics. The JGI also sustains a vibrant community …
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Plant Program
… to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing … compounds.  The program is working to expand genomic resources for key plant species, enhancing our understanding … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Partnerships: Myco-Ed
The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … analyses compile original data for improving fungal genomic resources empower students through isolation and genome … of fungal genome datasets. It includes JGI-sequenced and publicly available datasets encompassing a wide array of …
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Metagenome Program
… diversity and metabolic potential, with implications for energy production, environmental sustainability, and … focuses on developing computational tools and visualization resources that support user analysis of … resource for comparative analysis and annotation of all publicly available genomes from three domains of life, in a …
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Natural Prodcast Episode 5: Brad Moore
… and SIO. Oh, I should say what those are. Brad: What’s SIO, for all those listeners out there? Dan: Scripps Institution … and genes. And then genomics happened. Dan: Yeah, I did my first genome sequence with you. Brad: That’s right,  Dan: … become toxic, and be able to better, perhaps, inform the public when a toxic event is going to happen. Dan: Tell us a …
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