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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics … the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature …
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Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1)
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Metabolomics
Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an … profiles from diverse biological and environmental samples using advanced liquid chromatography mass … & Metabolomics Instrumentation … Metabolite Submission Resources & Guidelines … Metabolomics Platform Lead … More …
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The integrated microbial genomes system: an expanding comparative analysis resource
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JGI User Executive Committee Expands
Oslo, Aaron Robinson of Los Alamos National Laboratory, Rebecca Smith of the University of Wisconsin, Maggie Sogin of … On the UEC she intends to represent the user community by providing input on JGI policies and capabilities that … Los Alamos National Laboratory. With a background in fungal genetics and evolution, he helps manage the Bacterial-Fungal …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… natural product biosynthetic pathways, which led her to a successfully funded JGI CSP project. And we also got to talk … like a lot of people hedge their way into natural products by starting out in synthesis and then discovering more-- … if they are having issues and can help them find the right resources. DAN: Find the help they need, yeah. For sure. …
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Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58
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Building Sphagnum Genomic Resources
… potential carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system … to be larger than any other single plant genus. Peatlands accumulate partially decomposed matter, and researchers …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… find transcripts and show notes with links to lots of other resources, especially for these primer episodes, if you want … want to explain that to someone who doesn’t know much about genetics or anything else, science wise maybe, what genome … 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed in finding your vein of gold with aflatoxin? DAN …
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Natural Prodcast Episode 19: Bill Fenical
Bill Fenical from Scripps Institution of Oceanography in San Diego. Bill is a pioneer of marine natural products, … about drug discovery and why it’s so hard to succeed, and we talk about an ongoing project I’ve been … DAN UDWARY: So Alison, I’m really excited today. We have, by far, I think, one of the most decorated and legendary …
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Expanding Virophage Diversity
… genome sequences 10-fold through computational approaches. By mining more than 14,000 publicly available metagenomic … virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, including over 28,000 … & Applications (VEGA) Symposium. The work also used resources of the National Energy Research Scientific …
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The future of legume genetic data resources: Challenges, opportunities, and priorities
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