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Partners
Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and the National … (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data functionality. Close …
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Plant Program
… understanding of plant diversity and integrating various data types to explore the molecular mechanisms behind phenotypic evolution. It also utilizes advanced tools, including deep learning algorithms for gene … biology to ecosystem processes through model laboratory ecosystems. They are small plastic growth chambers where plants …
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Natural Prodcast Episode 12: Nadine Ziemert
UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … much I actually can learn just by really digging into the data and understanding what’s going on there. And now, … more into the meta genome mining. We started to build the tools for natural product researchers that easily can …
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Frequently Asked Questions: Project Management
… then be used to submit proposals, sample and project metadata, and to access JGI tools and systems. … Go to the “ edit contacts ” page in your account. …
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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … to this point, there has been a lack of fast and accurate tools for researchers to assess the quality of …
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Natural Prodcast Episode 15: Katherine Duncan
… the idea of taking all the different natural products data that there is and putting things, coalescing them, so … that I’ve appreciated since starting my own group is these tools, in terms of looking at the chemistry produced by … And as a result, there’s been a lot of work on open pond systems and infrastructure and growing microalgae. And to …
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User Support
Investigator Providing a general orientation to JGI systems to Investigators Preparation of formal Statement of … Project Manager will facilitate project execution by: Metadata verification and coordination with IMG , GOLD and … of your sequencing project at any time by logging on to the Genome Portals using your JGI login. After …
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Products
… sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is complete. … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) …
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Natural Prodcast Episode 11: Marnix Medema
Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … center and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, …
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Frequently Asked Questions: Proposal Submission
… begin, and all CSP proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to … on our YouTube channel as well as in this episode of our Genome Insider podcast.  You can also contact … here. All sequence data will be accessible on the JGI Data Portal.   … Yes. You should indicate this in the proposal so …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the … to extract meaningful biological insights from sequence data, employing IMG data and tools for comparative analysis, visualization and …
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Homepage
…   Gain access to omics technologies generating community data at zero cost —  submit a proposal.  …
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