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Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … to determine coverage of variants depends on project Fungal Minimal Draft Lower coverage short-read whole genome … sequencing Assembly, annotation ( Mycocosm ) 256/404 Fungal Standard Draft Whole genome shotgun sequencing using …

Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint … could be used to treat these highly resistant bacterial and fungal pathogens. And we’ve actually just wrapped up a year, … in bacteria as well. Yeah. DAN UDWARY: Yeah. Yeah, common root.  ALISON TAKEMURA: And so is that how your ethnobotany …

The United States  is the world’s leading soybean producer , and soybeans are used to produce … causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce crop yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science …

JGI Director to provide a scientific and technical overview of the JGI. The SAC is chartered to render advice, guidance, … at the JGI; and overview of the Community Science Program (CSP). A crucial job of the committee is to take the input from the CSP Proposal Study Panel on prioritization of CSP projects …

Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a … enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have contributed toward … (green). (From Haridas S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, …

The soybean is a crop that could boost biofuels and fertilize … about that work from researchers Gary Stacey (University of Missouri), Peter van Esse (The Sainsbury Laboratory) and …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … Nature Reviews Microbiology 20 (5), 255-255 Schulz et al. (2020) Giant virus diversity and host interactions through … metagenomics. Nature. 578 (7795), 432-436 Schulz et al. (2020) Advantages and limits of metagenomic assembly and …

Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and … the JGI’s 25th anniversary, the JGI mural references dozens of iconic JGI contributions to advancing the frontiers of …

The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the … Integrating genomics with metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables …

Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 fungal … the framework of the Mycorrhizal Genomics Initiative (CSP # 305), Metatranscriptomics of Forest Soil Ecosystems … Research Council under the European Union’s Horizon 2020 research and innovation programme under grant agreement …

Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is … through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., Leahy S. C., Attwood G. T., Teh K. H., …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … the need to have a limited and time-sensitive protection of certain types of data to support their use by those … FY22 and later through the Community Science Program (CSP), Facilities Integrating Collaborations for User Science …