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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with … in the analysis and publication of the claimed genome sequences. This opportunity, provided by the …
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Special Initiatives & Programs
… and should generally conform to the guidelines for our  CSP Large Scale call .  Process Proposals may be submitted … will develop fuels and products by integrating three highly interconnected DOE priority areas of Feedstock … science.  Projects include de novo generation of genome data, assistance in interpreting and/or building on …
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IMG Group
… data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The Integrated Microbial Genomes group is focused on:  Developing state-of-the-art … extracted from metagenomes, and also as a metric for quality control within IMG. While ANI is integrated within …
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … Earth’s ecosystems. … The Metagenome Program focuses on the high-throughput sequencing of microbial communities to …
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User Programs
… to the user and no granting of funds.   Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics Status CLOSED CLOSED ONGOING ONGOING …
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Environmental Genomics Group
Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture microbial and …
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Viral Genomics Group
… al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech .  37 , 29–37 Roux S, et …
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Community Science Program
The Community Science Program (CSP) provides the scientific community at large with access to high-throughput sequencing, synthesis, and metabolomics at … Areas . Through this program, the DOE aims to advance genome science-based scientific research from a broad range …
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De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana
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Natural Prodcast Episode 12: Nadine Ziemert
UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … mining and the directions it might take in the future. I highly recommend it. I’ll link to it in the show notes. … it worked pretty well. DAN UDWARY: No, they were very high quality. Yeah, for sure. NADINE ZIEMERT: Yeah, Dan… it’s a …
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … two sequenced genomes of a Streptomyces , or gram-positive high GC organism.  Dan: Yeah, not a lot of natural product … JGI projects over the years starting with, you know, the CSP that we did and then leading up to today to some …
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Natural Prodcast Episode 9: Roger Linington
… products field as it relates to structure elucidation and genome mining, and how we might start to better connect … that most entries were looked at more at once, and so the quality – the data quality – was reasonably high. And yeah, it gave it gave us enough enough pairs of …
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