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… Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated … based on their metagenome sequence, in the context of reference isolate genomes included from the IMG/M system. …

… episode 3 of the Primer! — DAN: So, you know, in the in the 50s 60s 70s, most of the exploration of this is done by … we can find more things. Turns out some of the early genomes that were sequenced for, say, Streptomyces – they … that secondary metabolism is an important strategic thrust. We think by exploring more aspects of secondary …

… of University and Research; all specimens collected and fungi isolated are preserved in the Culture Collection of Fungi from Extreme Environment, the Italian National …

… pathways, which led her to a successfully funded JGI CSP project. And we also got to talk about work at her … in is actually seeing whether we could go into the genomes and predict what the natural product might actually … But what was really interesting is when I started my lab in 2018, several papers came out right in a row all about this …

… bacterial sacred metabolite, and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, … and you can see that different Frankia have different size genomes depending on what kinds of plants, and what kinds of … from 1940 to 2000. As you can see, from the 1940s, into the 50s into the 60s, there was a huge growth – a huge explosion …

… Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … catalog of viral, microbial, and microeukaryote genomes and mobile genetic elements, linked to custom … environments. Integrating metatranscriptomes and metagenomes can, for instance, deepens our understanding of …

… the exploration of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not … reservoir of secondary metabolites produced by bacteria, fungi, algae and plants. These compounds are key to … factors and determine their binding sites across multiple genomes. Computational prediction of heterologous …

… has increased in a lot of fields– still not, probably, 50-50 in things like physics and maths– but there’s actually … in Antarctica on a ship. Yeah, so I went to Antarctica in 2018 as a participant in Homeward Bound 2, last year as … there have been huge advances in both. The cool thing about genomes is you can, well, if your assembly is good, you can …

… and a tool for predicting natural product structures from genomes. And I was writing grants furiously to try to get … similarity to a gene cluster with a known compound from the reference database: It must be identical. It must be that … from around the world contributed with, well, more than 150 authors of the paper in the end. And it was actually a …

… the pandemic in Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun … yes, sure, right. And yeah, so we worked on the Salinospora genomes. That was a really fun project. We had Brad on and … a marine actinomycete bacterium. So they look kind of like fungi but also make these mycelia. They kind of look like …

… instead. Proposals may not exceed 10 Tbp sequencing, 500 kbp synthesis, and 200 polar/500 nonpolar metabolomics samples, and should generally conform to the guidelines for our  CSP Large Scale call .  Process Proposals may be submitted …

… FY22 and later through the Community Science Program (CSP), Facilities Integrating Collaborations for User Science …