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… analyses, next-generation transcriptome de novo assembly, metagenome and metatranscriptome assembly, Hadoop based on … was responsible for the terabase scale data analysis in the cow rumen and sheep rumen metagenome projects. Standing at the …

The latest edition of the JGI Progress Report highlights notable research and scientific collaborations in 2018. The cover is an image of Mono Lake, a saline … here to go download one from the archive of JGI Progress Reports. Print copies will be available the annual JGI …

… back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser … natural products science as a field, we have arguably been studying microbial natural products in an ordered way for … technology and the improvement in sensitivity of those instruments. And that’s been followed by developments in pulse …

Facility, the JGI plays a leadership role in enabling the frontiers of research related to DOE’s missions in bioenergy, carbon cycling and biogeochemistry. In … the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA …

… in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis and pathway engineering Mass spectrometry … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript … sequence Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments Obtained by physical separation …

… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . … And these were not in natural products, these were in studying regulatory mechanisms of, first, E. coli and then … in an obvious way. NIGEL MOUNCEY: We did a little bit of metagenome screening work and did find related clusters. But …

… a member of JGI’s Sample Management Group, attended a conference in Florida to discuss a JGI pilot project … Jonathan’s email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy … do an environmental microbial community (metagenomic) soil study in an untouched region of the Everglades, the …

…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, … in defense, nutrient acquisition and communication. Studying how these compounds are biosynthesized and their …

Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi again, and welcome to Episode 6 … terrible. I was able to clean it up quite a bit, and the conversation was so interesting that I wanted to include it. This is a …

… curator there, with a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and … And for the audience, ethnobotany is the scientific study of the ways that people interact with plants, whether it’s for plants to make clothing, or musical instruments, or food, or medicine, which was really where my …

… from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. … algorithms to identify billions of protein sequences in metagenomes.  We continue to engage with our user community …

… associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how … partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and spatial …