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… to do an independent study on ethnobotany of some of the plants that people were using for medicines in this very … this custom drill made to drill about two feet of glacier core that we field sterilized and brought home. That was … feet under the surface and then we would take our two foot core. And so that’s only four feet in. And there is quite a …

… and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, archaea, they all have … products because they’re easy to find. They grow in the soil. These are the same guys that produce geosmin. And so … natural environment. They usually grow down within the soil. And that purple blob is going to be chock full of …

… biomass production for fuels, and growth in poor soils. In addition to bolstering sorghum fields, understanding this plant eventually offers avenues for translating its … shows only one slice of the adaptation possible for this plant. In other lines around the world, much more genetic …

… with a contract manufacturer to actually have them build a plant for production and fermentation and transfer that … risks that would lead to things like leakage of organism, plant, product, et cetera. But yeah, I think it allowed us … DAN: Correct.  NIGEL MOUNCEY: But they really span our core science programs which are microbes, and fungi, and …

… As a host, and a little bit of my newer work is focused on plants, but in both cases, you know, these molecules are how … for antibiotics and the microbes that make them is in the soil. There’s … uh… there’s an issue there though, in that … few of the antibiotics that people were looking for in the soil kept getting found over and over again. So we call this …

… contigs. Assembly, annotation ( IMG ) Depends on project Plant and Algal Standard Draft Whole genome shotgun … these projects. Assembly, annotation for ( Phytozome for plant, Phycocosm for algae) depends on genome Plant and Algal Resequencing SNP and short indel calls, …

… Advisory Committee, the Informatics Advisory Committee, the Plant Program User Advisory Committee, the Prokaryote …

… Uncovering associations between plant roots and fungi that can help or harm plant host health. The Science Researchers compared the … Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis identified fungal gene … Programme: Deconstruction and Reconstruction of the Plant Microbiota (SPP DECRyPT 2125)’ and the Cluster of …

… than 7 decades. So, this family of substances is always associated with toxicity, basically, killing cells. ALISON: … product chemistry? BEN:  Yeah. So, I was trained as a plant natural product chemist. When I first started in graduate school, I was working on terpenoids, plant natural products, and what really fascinated me – the …

… Yeast recombination and Golden Gate methods SynTrack and associated tools, which track samples through the JGI’s …

… how you synthesize nucleotides. Stuff that are at the core of what we call the central dogma. So what we would … could be a reasonable number if you are talking about a plant and a microbe interacting very stably. So it makes … we call CORASON, which is basically an acronym to look into core syntenic units that are actually are constructing a …