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… out every two weeks. This time, we’ve got a great interview with Ben Shen, from the Scripps Research Institute in Jupiter Florida. This interview is another one we recorded at … national resources. So, you may know the so-called Nagoya protocol, which prevents taking bio-resources from the native …

… to a regular schedule. I’m going to kick things off today with my interview with the Director of the Joint Genome … in developing natural products for agriculture, and his upcoming new role as the Society for Industrial Microbiology … around with Bacillus spores for a long time for food spoilage kind of testing, applications. And that’s funny …

… and we talk about an ongoing project I’ve been working with him on as an exploration into the secondary metabolism … So really happy to have you here today. There’s a couple of things I want to make sure that we talk about. You … many others, including Streptomycetes, which are common soil bacteria. DAN UDWARY: Yeah, we talk about them a lot …

… applications will focus on high-risk/high-payoff proposals within the focused topic areas that can be completed on an accelerated timeline as compared with the standard CSP projects. In addition, they must … technologies available at JGI and EMSL such as DNA-SIP, Protein SIP, Flux Balance analysis with metabolites, Isotope …

… episode 12 of Natural Prodcast. And it’s our conversation with Nadine Ziemert from the University of Tübingen in … Yeah, we’re doing this from home. And my own podcasting setup– and yours, too, Dan. DAN UDWARY: Yeah, you’re looking … of these environments? NADINE ZIEMERT: So we started with soil. But we also have, in collaboration with other people, …

U.S. Department of Energy Office of Science user facility supported by the Biological and Environmental Research … Integrative Genomics Building (IGB), a home it shares with the staff of the DOE Systems Biology Knowledgebase … to contaminants such as heavy metals or radionuclides in soils, freshwater, coastal sediments (coastal here defined  …

Bill Gerwick’s lab and doing research in Panama through support from the ICBG training program, which stands for … in making this happen. We had a really fun conversation with Roger about all this, in terms of how to build an … So we started out internally by making a list on the whiteboard of the top 50 journals that we thought were most …

… of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome … techniques and computational tools, the program supports foundational research related to soil nutrient cycling and health, terrestrial biogeochemical …

… independently evolved to establish symbiotic relationships with plants (mycorrhizae), and particularly how fungi that … validate how mycorrhizal fungi play an integral role in soil carbon storage. Summary There are three types of fungal … on the JGI fungal portal  MycoCosm . The work builds upon several papers and workshops, starting with the first …

Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew Doering and Bryce Foster and too … so. SMC is now released and ready for the public to tear it up. I’m super excited about this thing, and I hope you will … UDWARY: OK. One of the– I don’t know. Maybe we ask you the boilerplate questions that I try to tend to ask to most …

… mass spectrometry (LC-MS) based methods in combination with advanced computational analysis.   Overview of … experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified …