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SMC – which is the new Secondary Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew … Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and ready … of always working on natural products but just different tools and how to really access and manipulate these pathways …

Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that … gRNA-SeqRET , an organism-agnostic CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, …

Our data platforms are a key resource for the broader scientific … unified access to all JGI genomic databases and analytical tools for all JGI sequencing projects. In 2021, the JGI … — Plasmid Resources … Integrated Microbial Genomes — Virus Resources … Mycocosm … Phycocosm … Phytozome … …

The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … across at least two of the facilities, and generate datasets beyond what each of these facilities could generate … Environmental Sample Archives, Applying JGI and EMSL Omics Tools introduces the NEON resource, a network of field …

User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus … workflows for new product types, to the development of automated analysis pipelines for standard sequencing …

… in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … Advances in sequencing technologies and computational tools have uncovered a diversity of viruses that infect not … and soon, with trillions. The development of efficient, automated approaches to analyze and classify sequence data …

… symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are … by microbial partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and … experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this …

… components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, (meta)transcriptomic, and functional genomic data and serving them to users via the Integrated Microbial … extracted from metagenomes, and also as a metric for quality control within IMG. While ANI is integrated within …

… of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, … The ISME Journal. 8 (8), 1634-1644 … Publications … For further details, please reach out to the Group Lead …

… discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological function.   To jointly …

Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for …