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… protein or the genes that you are analyzing. And then we’re building phylogenies a lot, making phylogenetic trees, and … I think GTDB also started that. But I think taxonomy and genomic data are still kind of a mess. DAN UDWARY: Yeah, … in the past, we’ve had these monolithic databases, NCBI and IMG , that have a lot of data and really useful data, really …

… as many as it did and how that became sort of a trend in genomics. So anyway, yeah, JGI has been working in secondary … So all of the data that will be in SMC comes from public resources. You can submit your own genomes or whatever you’d … none of that is going to change. It’s only just– we’re just building onto it. So the site is usable now. The website is …

… its current partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data … organizations is discoverable and accessible. Linking the resources of powerful institutions like the JGI, KBase, … DOE Office of Science Public Reusable Research (PuRe) Data Resources are authoritative providers of data or …

… of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … and ecosystems at the molecular level. Integrating genomics with metabolomics fuels the discovery  of novel … This program integrates cutting-edge metabolomics with genomic data to gain insights into how small molecules …

… date, the project manager may then schedule and allocate resources for DNA sequencing. … via the Genome Portal , at the following sites: Microbes: IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   (citation: https://doi.org/10.1093/nar/gkaa939 …

… UC San Diego and Scripps Institution of Oceanography. (Courtesy of B. Moore) DAN: This is the second of our … all those art history photos of the, you know, various old buildings in in Rome didn’t quite do it for me. And at the … the mid-late ’80s. And at that time, you know, it’s before genomics existed. This is before we’re even thinking of …

… The central mission of the JGI’s Genomic Technologies department is   ensuring users have … .  Many users rely on a multifaceted combination of genomic, transcriptomic, proteomic, phenotypic, metabolomic, … Deputy of Genomic Technologies …

… execution by: Verifying metadata and coordinating with IMG , GOLD and others for data annotation and submission … as needed: Provide additional requested information or resources to users Coordinate meetings with DOE JGI Science …

… that can be converted to energy, are made up heavily of sphagnum mosses.  New research identifies sex chromosomes in … 5% of annual greenhouse gas emissions. Understanding how sphagnum, a primary component of peatlands, processes  … sinks and minimize their role as carbon sources. Summary Sphagnum, a genus of just under 400 mosses that can carry up …

… fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. Book a session via … The IMG/M system serves as a community resource for comparative … three domains of life, in a uniquely integrated context. IMG/M provides tools for analyzing the functional capability …

… Photon Source Capabilities for FICUS Research describes the resources available from all the facilities participating in the FY25 call, introduces the available APS resources, and contains useful tips for submitting a … The FY23 FICUS Open Call for Proposals describes the resources available from all the facilities participating in …

… submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User … Elucidating Sphagnum microbiome genetic interactions for improved growth … CSP Functional Genomics Submission …