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Microbiome Data Science Team
… transition of biology into data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. … in tackling grand challenges in Biology, with a special focus on microbiome research.  These efforts include … genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts …
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Institutional User Agreements
… Every approved proposal starts with a User Agreement — before any work can begin, including the … must have the legal authority to commit your institution or organization to the terms and conditions in the User … Representative. Please check with your unit director or supervisor for the appropriate contact name, email address …
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Natural Prodcast Episode 18: A CSP Primer
… more free-form, and this is the longer cut of the discussions you may have hear over there, with a few more … science facility”, and so today what you’re going to hear about are some more of the details around that. … submission or if something is unclear, contact us. We’re super happy setting up a quick Zoom call, hop on the call …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis … at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome … S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . …
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JGI Advisory Committee
… JGI advisory and executive committees, such as the User Executive Committee, the DNA Synthesis Science User Advisory Committee, the Fungal and Algal Program User Advisory Committee, the Informatics Advisory … Committee, the Plant Program User Advisory Committee, the Prokaryote Program User Advisory Committee, and the …
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Workforce Development & Education Outreach
… directly with specific universities, continuing education programs in the Bay Area, and established programs affiliated with the Berkeley Lab A-LIFT team.    … Modeled on the JGI-UC Merced internship program, a similar collaboration with AAMU was launched in … Summer Research Institute (SRI) at UC Berkeley is a program designed to foster a profound understanding of …
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Natural Prodcast Episode 14: Nigel Mouncey
… Institute and head of the Secondary Metabolites Science Program at JGI, and also my boss, Nigel Mouncey. I got him on to talk about JGI’s vision for secondary metabolism, his past in industry in developing natural products for agriculture, and … developing natural products for commercial use. Read about JGI’s goals for secondary metabolism by downloading a …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  … started and leads the JGI’s Secondary Metabolites Science Program, which I was hired into, and my job is to do cool …
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Frequently Asked Questions: Project Management
… a downloadable pdf of products categorized by Science Program.  … The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , and submit your proposal … and if no additional signatures are required. Learn more about User Agreements and additional required documentation …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural products and the science and scientists of … my area of expertise, which is genome mining. You’ll hear us talk about what it is, hear me make a pained analogy to … wonder if that name, antiSMASH, was in part inspired by Super Smash Brothers. Because I know that that’s a very …
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Natural Prodcast Episode 22: Alison Narayan
… the series of interviews we recorded at the Society for Industrial Microbiology and Biotechnology (SIMB) Natural … lot of crossover, where us genome miners get really jazzed about finding enzymes that do unusual or unprecedented chemistry. So it’s super fun to hear about what folks are up to in a slightly …
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Natural Prodcast Episode 16: Marcy Balunas
… than anyone else.  DAN: Yeah. I mean fine in pandemic adjusted terms right?  MARCY: Yes–  ALISON: Yeah.  MARCY: … like I can sort of see when I’m doing the work or thinking about something I can kind of see like the squid and the … even the organism itself.  So doing sort of simplified super simple diffusion type assays and then using that to …
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