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Microbiome Data Science Team
… into data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. … in tackling grand challenges in Biology, with a special focus on microbiome research.  These efforts include … Bowers RM, et al. (2017) Minimum information about a single amplified genome (MISAG) and a …
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User Programs
… of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.   Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional … 2025 August 2025 November 2025 March 2026 …   Learn more about our individual calls and other opportunities to work …
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Natural Prodcast Episode 19: Bill Fenical
I learned a lot so much history from this conversation about why the ocean was basically unexplored until the 70s, … project,  so this is pretty comfortable territory for us, and I’m grateful to be working with him, and so happy we … well, thank you, Dan. I was actually trained as a synthetic organic chemist. My PhD is in synthesis. And I, of course, …
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Natural Prodcast Episode 17: Cassandra Quave
… and now COVID. We also wanted to talk to her because she’s written a book about her life and her science, called The Plant Hunter , … in Human Health at Emory University based in Atlanta, Georgia. I’m also the herbarium curator, so I take care of a …
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  … with JGI, a national lab, or Scripps Research, a nonprofit organization, we are going to make this available to the …
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2024 Progress Report
… in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of … in our new Strategic Plan , which was released in April 2024 — through serving an increased number of users with a … capabilities, user service and workforce development. As of February 2025, we have already completed 37% of the two-year …
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Natural Prodcast Episode 18: A CSP Primer
… more free-form, and this is the longer cut of the discussions you may have hear over there, with a few more … science facility”, and so today what you’re going to hear about are some more of the details around that. … sequenced, or whatever the  equivalent is for more complex organisms, or hundreds of kb synthesized, and so on The …
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Natural Prodcast Episode 13: Francisco Barona Goméz
Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural products and the science and scientists of … natural products systems. This conversation came about because he challenged me on my use of the term “secondary … diversity selected for. But why? I mean, why is it that our organization is spending so much resources on energy and …
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How to Submit Sequencing Samples
… on accessing sample-level reports and tracking statuses.  Please follow the steps outlined below. Click the drop-downs to learn more about each step in the process. If you have any questions, … samples to the JGI. PI sends Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need …
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Data Policy
Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) … making publicly available use-restricted data. … Read about our policy on research data and analysis products … through all user projects accepted FY22 and later. … Read about our policy on research data and analysis products …
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Frequently Asked Questions: Proposal Submission
See below for a list of Frequently Asked Questions about our proposal submission process. You can review … limits, and instructions.  Many of the submissions are done using web-based forms.   To view the proposal templates, go to the proposal submission page , login using your JGI account (create one here if you don’t already …
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Natural Prodcast Episode 15: Katherine Duncan
So we’ve got Kate here today, and we wanted to talk to her about a whole list of things. So we have a Scripps … and we want to talk about molecular networking, because I really enjoyed the review that you wrote with Marnix … updates it, so I wouldn’t want to take the credit for the organization. [LAUGHTER] Dan Udwary: Fair enough. And so you …
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