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Natural Prodcast Episode 18: A CSP Primer
… We don’t want to get a proposal that’s just asking for 20 microbial genomes. That is not a good fit for our annual … call where smaller proposals may be a fit. Still not 20 many microbes. We still we work in plates, right? We’re a … high throughput sequencing capabilities. Such as sending us 20 DNA samples is also not a good fit for JGI, even for the …
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Viral Genomics Group
… Coclet C, Camargo AP, Roux S. (2024) MVP: a modular viromics pipeline to identify, filter, … from metagenomes. mSystems 9:e00888-24. https://doi.org/10.1128/msystems.00888-24 Coclet, C., Sorensen, P.O., Karaoz, U. … ISME J. 15, 1569–1584. https://doi.org/10.1038/s41396-020-00870-1 Roux, S. et al. (2019) Cryptic inoviruses …
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Special Initiatives & Programs
… may not exceed 10 Tbp sequencing, 500 kbp synthesis, and 200 polar/500 nonpolar metabolomics samples, and should … that seeks to reduce U.S. gasoline consumption by 20% within 10 years through increased efficiency and … of Illinois at Urbana-Champaign: Announced in July 2017, CABBI is a collaboration between Illinois’ Institute …
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A More Intuitive Phytozome Interface
… version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version 13 will become the current, and only, version of Phytozome …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… 10 to the negative 9th. Picomolar, 10 to the negative 12th. DAN: Yeah. So very-- BETSY PARKINSON: Very, very-- … But what was really interesting is when I started my lab in 2018, several papers came out right in a row all about this … about 140 unique cyclic peptides. And from that, about 130 of them were not previously known. DAN: Very cool. …
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BiG-SCAPE 2.0 and BiG-SLiCE 2.0: scalable, accurate and interactive sequence clustering of metabolic gene clusters
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Natural Prodcast Episode 4: Nancy Keller
… conference, which took place a few weeks ago, in January of 2020. So, you might hear us referencing a conference, and … mostly coming out of China and India, very cheap for $100-$200. But you have so many contigs. This is a problem with … (SIMB) Natural Products meeting in San Diego in January 2020. You can find the podcast on Apple , Google , Spotify , …
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Natural Prodcast Episode 15: Katherine Duncan
… inside them. And this was, I think it must’ve been about 2001, maybe, and so it was before smartphones and before … women get selected each year as a cohort to experience this 12-months leadership program, of which the last month is in … 3. And I currently co-leading the science program for the 12-months for Homeward Bound 5 and was meant to be in …
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New and Improved: Eucalyptus Reference is Now Accessible
… | Genetics , with significant advances compared to the 2014 Eucalyptus grandis reference genome that has been … have relied on the E. grandis reference genome published in 2014 by a team led by University of Pretoria scientists with … genome assembly and annotation. Genome contiguity of the 2025 phased reference and 2014 diploid genome reference was …
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Sharing Structure and Function in Biological Design with SBOL 2.0
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … launched a concerted SOD defensive campaign beginning in 2000. In an effort to fingerprint the pathogen and trace its … University, was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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SbCOMT (Bmr12) is involved in the biosynthesis of tricin-lignin in sorghum
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