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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Frequently Asked Questions: Proposal Submission
… go to the proposal submission page , login using your JGI account (create one here if you don’t already have an … or longer to obtain with no guarantee of approval.    JGI staff are not eligible to submit proposals, or to be listed as co-PIs or collaborators.   JGI’s standard User Agreement must be signed before work can …
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Natural Prodcast Episode 12: Nadine Ziemert
… ALISON TAKEMURA: That’s right. Yeah, we’re doing this from home. And my own podcasting setup– and yours, too, Dan. DAN … was fascinating, I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE … ZIEMERT: Yes. DAN UDWARY: I think that was one of the JGI’s early moves into sequencing things for the purpose of …
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Natural Prodcast Episode 2: The Primer, Part 2
… have that goal. That’s not as much our goal here at the JGI – we are not a medicinally focused organization. And so, … why we are still sequencing lots of stuff, and why the JGI is a key driver in some of the science. ALISON: Very … compounds that probably kill other bacteria, and give them home field advantage. ALISON: Okay. Wow, it’s so weird how …
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Natural Prodcast Episode 18: A CSP Primer
… with my co-host Alison Takemura, who’s moved on from JGI to do real journalism, and we wish her all the best. … will be too. But, today, I got the chance to work with my JGI colleague Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome …
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Tour the IGB
… Take a virtual tour of the IGB, home of the DOE Joint Genome Institute. To navigate virtual … zoom in and out. 1st floor 2nd floor 3rd and 4th Floors The JGI mural on the 3rd floor whimsically references dozens of iconic JGI contributions to advancing the frontiers of …
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Frequently Asked Questions: Project Management
… The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , and submit your proposal online … (WIP) interface.    For commonly asked questions about JGI’s proposal calls and proposal submission, as well as … The “User” signing the JGI User Agreement will be an authorized representative from …
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Plant Program
… With collaborative user projects, the JGI’s Plant Program delves into the natural world’s … Flagship Genomes are selected through discussion with the JGI Plant Genome Advisory Committee and DOE, designating a set of JGI plant genomes that are the most important to DOE mission …
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Natural Prodcast Episode 3: The Primer, Part 3
… state of things, and what we’re hoping to accomplish at JGI in this area. If this series of podcast episodes has … suggestions for others feel free to let me know by emailing jgi[email protected], or reaching out on Twitter to @JGI or me @danudwary. Like I said in the intro to the first …
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Natural Prodcast Episode 22: Alison Narayan
… niche in chemical enzymology. So, we talked about her JGI DNA synthesis project to explore the chemical … of flavin independent monooxygenases with the help of JGI’s DNA synthesis grant. And that having a whole panel of … short half life. JACKIE WINTER: So with your [project] with JGI, how many flavin monooxygenases are you sequencing, sort …
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How to Submit Sequencing Samples
… needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing … have any questions, please contact your Project Manager or jgi[email protected] . … 1) Review JGI sample QC requirements and protocols Obtaining DNA and …
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Data Policy
… the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our … of data to support their use by those generating data. The JGI Data Policy applies to research data and analysis … : A period in which data is not publicly available in JGI systems or outside repositories. Full access is granted …
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