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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only accessible … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
Learn more
Mining New Frontiers: The Critical Minerals and Materials Joint Call
… Access to the Molecular Foundry and use of JGI capabilities is free. The JGI supports remote users. Users conduct experiments in … users with various outputs free of charge, including data such as fully annotated genome assemblies or … them as part of the user calls. Please refer to the JGI CMM call available here, which includes the capabilities …
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User Programs
… be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.  … Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and Materials Status CLOSED CLOSED … who have not been a PI on any approved proposal with the JGI Investigators interested in translating genomic …
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Metagenome Program
… Program combines large-scale, time-series metagenomic data with detailed characterization of model systems to … and metatranscriptomics, to metagenomics and metabolomics data, shedding light on microbial metabolism and activity in … environmental viral populations. Enabling microbiome data science:  The JGI supports microbiome data science by …
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FICUS Overview
… free to the PI by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides customized … All proposals undergo technical review by JGI staff as well as staff at the other participating …
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Natural Prodcast Episode 12: Nadine Ziemert
… was fascinating, I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE … much I actually can learn just by really digging into the data and understanding what’s going on there. And now, … of searching the internet, searching literature, and making databases. Because that’s what I noticed is really a …
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Frequently Asked Questions: Project Management
… The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , and submit your proposal online … (WIP) interface.    For commonly asked questions about JGI’s proposal calls and proposal submission, as well as … The “User” signing the JGI User Agreement will be an authorized representative from …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of … molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … program integrates cutting-edge metabolomics with genomic data to gain insights into how small molecules function …
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User Advisory Committees
… the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley … stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in this Code of Conduct. … The UEC represents the JGI user community and is responsible for providing input …
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Plant Program
… With collaborative user projects, the JGI’s Plant Program delves into the natural world’s … understanding of plant diversity and integrating various data types to explore the molecular mechanisms behind … health. By integrating cutting-edge technologies and data-driven methods, the program equips researchers …
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FICUS-NERSC/KBASE
… of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological function.   To … expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in …
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How to Submit Sequencing Samples
… needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing … have any questions, please contact your Project Manager or jgi[email protected] . … 1) Review JGI sample QC requirements and protocols Obtaining DNA and …
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