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Computationally Classifying Fungal Lifestyles
As a proof of concept, researchers developed an algorithm that “taught” a computer how to classify 101 representative … Dothideomycetes . The data allowed the team to reclassify 25  Dothideomycetes species, and also provides more … User Facility, is supported under Contract No. DE-AC02-05CH11231. The work was also supported by the NSF grants  …
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A sweet spot in marine ecosystems
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Ancient Algae Reveal Secrets of Plant Evolution
Research uncovers the genetic foundations that helped plants conquer land over 600 million … Institutes of Health (NIH) awards (R21AI171952) and (R01GM140370) all to Y.Y., and by the German Research Foundation … Adaptation to Land: Plant Evolution to Change’ (SPP 2237), and grant 410739858 in the frame of the project …
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Pinning Down a Piece of Photosynthesis
… are easy to point out. Plants, algae and cyanobacteria create the air we breathe and the fuel for food webs as they … longtime JGI collaborator Sabeeha Merchant’s group. In 2011, they inventoried a swath of blueprints to find parts … all,” Blaby-Haas said. A more apt name for a Jane Doe After screening hundreds of GreenCut2 proteins, Blaby-Haas emerged …
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What Happens Underground Influences Global Nutrient Cycles
DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy (DOE) Office of Science … and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for support from 53 received through a joint …
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Nikos Kyrpides
… dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. (2023) Identification … diverse clades of bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the …
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Behind the Paper: Hot Springs Metagenomics
Adapting the graduate research experience amidst a global pandemic   …
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with … and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of Energy … the US Department of Energy under contract no. DE-AC02-05CH11231. Computational analyses at UNSW Sydney were performed …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Large-scale comparative analysis leads to identification of biosynthetic gene … in these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( …
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John Vogel
Prior to this, he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind … distinct lineages of allotetraploid Brachypodium. Genetics, 223 (2), art. no. iyac146 DOI: 10.1093/genetics/iyac146 … Nature Communications 11 (1), 1-16  https://doi.org/10.1038/s41467-020-17302-5 Varoquaux, et. al.N. 2019 …
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Changes to virus taxonomy and the ICTV Statutes ratified by the International Committee on Taxonomy of Viruses (2024)
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Mindfully Moving JGI
JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab … heart of the Berkeley Lab main campus. On Monday, November 11, a week after they’d been  moved to Berkeley , two of the … Turner. How extensive? Consider that the process of moving 250 people and their equipment from 4 single-story buildings …
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