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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements …       Francis Martin on the main impact of ectomycorrhizal fungi, excerpted from his talk at the 2015 JGI Annual … Genome Inside: THE Bioenergy Tree …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have … 1000 fungal genomes to create two reference genomes for all fungi families — essentially, the foundation for an … Riverside would focus on broad sampling of early diverging fungi, and Francis Martin of the French National Institute …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral … wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is also developing single-nuclei … BS in Biochemistry and Cell Biology, University of California, …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those researchers send their samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum …
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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let … In this episode, Alison and I talk to Marnix Medema, from …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a … what TFs and regulatory networks are conserved across fungi.” Using multiDAP-seq, Nagy’s team is comparing five … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for students and … students developing skills in fungal biology and genomics. Fungi can be better understood through reference genomes, … no reference genomes. It’s a key problem to solve because fungi are very diverse organisms with potential …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On … current, and only, version of Phytozome accessible as an interactive website. Since May 2019, v12 has not had any … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI on the 2020 Highly Cited Researchers List
… those recognized by Clarivate Analytics as “true pioneers in their fields over the last decade, demonstrated by the … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. Additionally, as part of an … 135 fungal sequenced genomes to understand how plants and fungi developed symbiotic relationships, and how the …
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Triggering Morel Fruiting
… Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis Martin from the Institut … aims to provide genomic information for every family of fungi. In the following guest piece, JGI user Dr. Tan … are economically, culturally, and ecologically important fungi, widely prized as a culinary delicacy, but also …
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