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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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Adaptation strategies of giant viruses to low-temperature marine ecosystems
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New insights from uncultivated genomes of the global human gut microbiome
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Kjiersten Fagnan
… flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement … International Conference for High Performance Computing, Networking, Storage and Analysis, 2018, pp. 717-730, doi: …
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Metagenomic Sequencing of Two Salton Sea Microbiomes
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Picking Up Threads of Cotton Genomics
In the United States, cotton production centers around two varieties: 95 percent of what is grown is known as … for Biotechnology. “The goal has been for all this new cotton work, and even the original cotton project was to … D are available for comparative analysis on JGI’s plant data portal  Phytozome , which is a community repository and …
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Honey Bee Gut Microbiota Divvy Up Dinner
… called pectin and hemicellulose. While these two polysaccharides can yield sugar monomers, it’s only with … what biochemical processes? Now, an international team of researchers has identified the major metabolic roles of … that interested the authors was that an evolutionary analysis of  Bifidobacterium strains in honey bees and …
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Ian Blaby
Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint Genome Institute, where … strain engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. … approach to reveal the functional links between gene networks. BMC genomics. 20:12. 2019 Anderson et. al., …
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Understanding Wildfire Recovery, Starting in Soil
… — mainly actinobacteria, as well as proteobacteria, bacteroidata, and patescibacteria. A major strength of this kind of … from Colorado State University, the US Forest Service, New Mexico State University, the Environmental Molecular … and Coniochaeata lignaria on MycoCosm Data portal … Datasets …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
We work with start-ups and mature companies, as long as the data are not proprietary. In addition, the JGI has a Partnerships Development Team which helps catalyze collaborations with companies (and other … support, how much help can users expect for data analysis of the different omics analysis? Are users expected …
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The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization
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What Happens Underground Influences Global Nutrient Cycles
Collaborations for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national … Tfaily of the University of Arizona. Her team aims to use data from an interdisciplinary field campaign taking place … facility that accelerates scientific discovery and pioneers new capabilities to understand biological and environmental …
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