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A Natural Mechanism Can Turbocharge Viral Evolution
… The first step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” … sampled all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and is the head of the Viral Genomics group at the JGI, thinks that if you’re a virus or …
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Ian Blaby
… analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead at … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral … Wales, Cardiff, Genetics Ph.D. – University of Cambridge., Microbial molecular biology Post-doctoral positions  – …
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Statement on the Use of Genomics Data
… Institute (JGI) is committed to advancing the field of genomics through open access to resources and promoting data … upon the principles for open access in the field of genomics established in  Bermuda (1996-1997) and reinforced by the  Fort Lauderdale Agreement …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved … speaker at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & Environment Meeting, to be held in … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Annual Genomics of Energy & Environment Meeting
… us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & Environment Meeting! The JGI convenes …
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From Competition to Cooperation
… genomes of symbiotic species available: 73 saprotrophs and 62 mycorrhizal species. The 62 mycorrhizal species include 29 newly-sequenced … will assist researchers in moving toward functional genomics studies to learn more about the inner workings of … DE-AC02-05CH11231 within the framework of the Mycorrhizal Genomics Initiative (CSP # 305), Metatranscriptomics of …
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Complete Genome Sequence of the Opitutaceae Bacterium Strain TAV5, a Potential Facultative Methylotroph of the Wood-Feeding Termite Reticulitermes flavipes
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Rex Malmstrom
… Applications group to operate a similar single-cell genomics pipeline that provides JGI users access to the … His group also handles the Stable Isotope Probing (SIP) Metagenomics pipeline  that reveals in situ functional activities of specific microbial groups within complex communities.  The Microscale …
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Graduate Students Get Thesis Research Opportunity at the JGI
… central to Office of Science mission areas across the 6 Office of Science research programs. Among the recipients … is Mo Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of Mark Sistrom’s … to an exceptional caliber of scientists.” For her project, “Microbial Community Structure and Methane Production in …
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JGI@25: Solving the Mystery of the Missing Oil
… Berkeley Lab. Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed in several Lab … also helped track and characterize the shifting waves of microbial communities involved in removing different …
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A Grass Model to Help Improve Giant Miscanthus
… was supported by EU FP7 KBBE.2011.3.1-02, grant number 289461 (GrassMargins) and the DOE Office of Science, Office of … and Environmental Research (BER), grant nos. DE-SC0006634 and DE- SC0012379. The generation of the tetraploid M. …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… may be akin to finding a single snowflake on a colored-in page of that book. Published online September 28, 2022, in … store their genetic information in RNA without a DNA stage. “I would argue RNA viruses globally are even less … metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then …
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